IdeoViz: Plots data (continuous/discrete) along chromosomal ideogram
Version 1.10.0

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Browse man pages Browse package API and functions Browse package files

AuthorShraddha Pai <shraddha.pai@utoronto.ca>, Jingliang Ren
Bioconductor views Microarray Visualization
Date of publicationNone
MaintainerShraddha Pai <shraddha.pai@utoronto.ca>
LicenseGPL-2
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("IdeoViz")

Man pages

avgByBin: Aggregates data by genomic bins
binned_fullGenome: Data for example 3.
binned_multiSeries: Data for vignette example 1.
binned_singleSeries: Data for example 2.
getBins: getBins
getIdeo: Download ideogram table from UCSC
GSM733664_broadPeaks: Data for vignette example 4.
hg18_ideo: Ideogram table for hg18
IdeoViz-package: Plots continuous or discrete data along chromosomal ideogram
plotChromValuePair: Base function which plots the ideogram and superimposed data...
plotOnIdeo: Plot data superimposed on chromosomal ideogram
wins: Data for vignette example 1.
wins_discrete: Data for example 2.
wins_entiregenome: Data for example 3.

Functions

GSM733664_broadPeaks Man page
IdeoViz-package Man page
avgByBin Man page Source code
binned_fullGenome Man page
binned_multiSeries Man page
binned_singleSeries Man page
getBins Man page Source code
getIdeo Man page Source code
hg18_ideo Man page
plotChromValuePair Man page Source code
plotChromosome Source code
plotOnIdeo Man page Source code
plot_values Source code
printMargins Source code
wins Man page
wins_discrete Man page
wins_entiregenome Man page

Files

DESCRIPTION
NAMESPACE
R
R/avgByBin.R
R/getBins.R
R/getIdeo.R
R/plotChromValuePair.R
R/plotOnIdeo.R
build
build/vignette.rds
data
data/GSM733664_broadPeaks.txt.gz
data/binned_fullGenome.rda
data/binned_multiSeries.rda
data/binned_singleSeries.rda
data/examples.rda
data/hg18_ideo.txt.gz
data/wins.rda
data/wins_discrete.rda
data/wins_entiregenome.rda
inst
inst/NEWS
inst/doc
inst/doc/Vignette.R
inst/doc/Vignette.Rnw
inst/doc/Vignette.pdf
man
man/GSM733664_broadPeaks.Rd
man/IdeoViz-package.Rd
man/avgByBin.Rd
man/binned_fullGenome.Rd
man/binned_multiSeries.Rd
man/binned_singleSeries.Rd
man/getBins.Rd
man/getIdeo.Rd
man/hg18_ideo.Rd
man/plotChromValuePair.Rd
man/plotOnIdeo.Rd
man/wins.Rd
man/wins_discrete.Rd
man/wins_entiregenome.Rd
vignettes
vignettes/Vignette.Rnw
IdeoViz documentation built on May 20, 2017, 9:54 p.m.