IdeoViz: Plots data (continuous/discrete) along chromosomal ideogram

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Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Author
Shraddha Pai <shraddha.pai@utoronto.ca>, Jingliang Ren
Date of publication
None
Maintainer
Shraddha Pai <shraddha.pai@utoronto.ca>
License
GPL-2
Version
1.8.0

View on Bioconductor

Man pages

avgByBin
Aggregates data by genomic bins
binned_fullGenome
Data for example 3.
binned_multiSeries
Data for vignette example 1.
binned_singleSeries
Data for example 2.
getBins
getBins
getIdeo
Download ideogram table from UCSC
GSM733664_broadPeaks
Data for vignette example 4.
hg18_ideo
Ideogram table for hg18
IdeoViz-package
Plots continuous or discrete data along chromosomal ideogram
plotChromValuePair
Plot a chromosome-value pair
plotOnIdeo
Plot data superimposed on chromosomal ideogram
wins
Data for vignette example 1.
wins_discrete
Data for example 2.
wins_entiregenome
Data for example 3.

Files in this package

IdeoViz/DESCRIPTION
IdeoViz/NAMESPACE
IdeoViz/R
IdeoViz/R/avgByBin.R
IdeoViz/R/getBins.R
IdeoViz/R/getIdeo.R
IdeoViz/R/plotChromValuePair.R
IdeoViz/R/plotOnIdeo.R
IdeoViz/build
IdeoViz/build/vignette.rds
IdeoViz/data
IdeoViz/data/GSM733664_broadPeaks.txt.gz
IdeoViz/data/binned_fullGenome.rda
IdeoViz/data/binned_multiSeries.rda
IdeoViz/data/binned_singleSeries.rda
IdeoViz/data/examples.rda
IdeoViz/data/hg18_ideo.txt.gz
IdeoViz/data/wins.rda
IdeoViz/data/wins_discrete.rda
IdeoViz/data/wins_entiregenome.rda
IdeoViz/inst
IdeoViz/inst/NEWS
IdeoViz/inst/doc
IdeoViz/inst/doc/Vignette.R
IdeoViz/inst/doc/Vignette.Rnw
IdeoViz/inst/doc/Vignette.pdf
IdeoViz/man
IdeoViz/man/GSM733664_broadPeaks.Rd
IdeoViz/man/IdeoViz-package.Rd
IdeoViz/man/avgByBin.Rd
IdeoViz/man/binned_fullGenome.Rd
IdeoViz/man/binned_multiSeries.Rd
IdeoViz/man/binned_singleSeries.Rd
IdeoViz/man/getBins.Rd
IdeoViz/man/getIdeo.Rd
IdeoViz/man/hg18_ideo.Rd
IdeoViz/man/plotChromValuePair.Rd
IdeoViz/man/plotOnIdeo.Rd
IdeoViz/man/wins.Rd
IdeoViz/man/wins_discrete.Rd
IdeoViz/man/wins_entiregenome.Rd
IdeoViz/vignettes
IdeoViz/vignettes/Vignette.Rnw