API for LEA
LEA: an R package for Landscape and Ecological Association Studies

Global functions
$,pcaProject-method	Man page
.DollarNames.pcaProject	Source code
G	Man page
G,snmfProject-method	Man page
LEA-package	Man page
Q	Man page
Q,snmfProject-method	Man page
adjusted.pvalues,lfmmProject-method	Man page
ancestrymap	Man page
ancestrymap2geno	Man page Source code
ancestrymap2lfmm	Man page Source code
barchart	Man page
barchart,snmfProject-method	Man page
combine.lfmmProject	Man page
combine.lfmmProject,character,character-method	Man page
combine.snmfProject	Man page
combine.snmfProject,character,character-method	Man page
create.dataset	Man page Source code
cross.entropy	Man page
cross.entropy,snmfProject-method	Man page
cross.entropy.estimation	Man page Source code
currentDir	Source code
eigenvalues	Man page
eigenvalues,pcaProject-method	Man page
eigenvectors	Man page
eigenvectors,pcaProject-method	Man page
env	Man page
example_ancestrymap	Man page
example_geno	Man page
example_lfmm	Man page
example_ped	Man page
example_vcf	Man page
export.lfmmProject	Man page
export.lfmmProject,character-method	Man page
export.pcaProject	Man page
export.pcaProject,character-method	Man page
export.snmfProject	Man page
export.snmfProject,character-method	Man page
genetic.offset	Man page
genetic.offset,lfmm2Class-method	Man page
geno	Man page
geno2lfmm	Man page Source code
getExtension	Source code
import.lfmmProject	Man page
import.lfmmProject,character-method	Man page
import.pcaProject	Man page
import.pcaProject,character-method	Man page
import.snmfProject	Man page
import.snmfProject,character-method	Man page
impute	Man page
impute,snmfProject-method	Man page
lfmm	Man page Source code
lfmm.data	Man page
lfmm.pvalues	Man page
lfmm.pvalues,lfmmProject-method	Man page
lfmm2	Man page Source code
lfmm2.test	Man page
lfmm2.test,lfmm2Class-method	Man page
lfmm2geno	Man page Source code
listMethods_pcaProject	Source code
load.lfmmProject	Man page
load.lfmmProject,character-method	Man page
load.pcaProject	Man page
load.pcaProject,character-method	Man page
load.snmfProject	Man page
load.snmfProject,character-method	Man page
mlog10p.values,lfmmProject-method	Man page
modified	Source code
p.values,lfmmProject-method	Man page
pca	Man page Source code
ped	Man page
ped2geno	Man page Source code
ped2lfmm	Man page Source code
plot,lfmmProject-method	Man page
plot,pcaProject-method	Man page
plot,snmfProject-method	Man page
projectLfmmLoad	Source code
projectSnmfLoad	Source code
projections	Man page
projections,pcaProject-method	Man page
read.env	Man page Source code
read.geno	Man page Source code
read.lfmm	Man page Source code
read.zscore	Man page Source code
remove.lfmmProject	Man page
remove.lfmmProject,character-method	Man page
remove.pcaProject	Man page
remove.pcaProject,character-method	Man page
remove.snmfProject	Man page
remove.snmfProject,character-method	Man page
sdev	Man page
sdev,pcaProject-method	Man page
setExtension	Source code
show,lfmmClass-method	Man page
show,lfmmProject-method	Man page
show,pcaProject-method	Man page
show,snmfClass-method	Man page
show,snmfProject-method	Man page
snmf	Man page Source code
snmf.pvalues	Man page
snmf.pvalues,snmfProject-method	Man page
stop.silent	Source code
struct2geno	Man page Source code
summary,lfmmProject-method	Man page
summary,pcaProject-method	Man page
summary,snmfProject-method	Man page
test_character	Source code
test_double	Source code
test_extension	Source code
test_input_file	Source code
test_integer	Source code
test_logical	Source code
tracy.widom	Man page
tracy.widom,pcaProject-method	Man page
tutorial	Man page
vcf	Man page
vcf2geno	Man page Source code
vcf2lfmm	Man page Source code
write.env	Man page Source code
write.geno	Man page Source code
write.lfmm	Man page Source code
z.scores	Man page
z.scores,lfmmProject-method	Man page
zscore.format	Man page