geno: Input file for 'snmf'
In LEA: LEA: an R package for Landscape and Ecological Association Studies
Description
Details
Author(s)
See Also
Description
Description of the geno format.
The geno format can be used as an input format
for genotypic matrices in the functions snmf,
lfmm, and pca.
Details
The geno format has one row for each SNP.
Each row contains 1 character for each individual:
0 means zero copy of the reference allele.
1 means one copy of the reference allele.
2 means two copies of the reference allele.
9 means missing data.
Here is an example of a genotypic matrix using the geno format with 3
individuals and 4 loci:
1
2
3
4
112
010
091
121
Author(s)
Eric Frichot
See Also
geno2lfmm
lfmm2geno
ancestrymap2geno
ped2geno
vcf2geno
read.geno
write.geno
LEA documentation built on Nov. 8, 2020, 8:19 p.m.
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Description Details Author(s) See Also
Description
Description of the geno format.
The geno format can be used as an input format
for genotypic matrices in the functions snmf,
lfmm, and pca.
Details
The geno format has one row for each SNP.
Each row contains 1 character for each individual:
0 means zero copy of the reference allele.
1 means one copy of the reference allele.
2 means two copies of the reference allele.
9 means missing data.
Here is an example of a genotypic matrix using the geno format with 3
individuals and 4 loci:
1 2 3 4 | 112
010
091
121
|
Author(s)
Eric Frichot
See Also
geno2lfmm
lfmm2geno
ancestrymap2geno
ped2geno
vcf2geno
read.geno
write.geno
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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