LPEadj: A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.

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Two options are added to the LPE algorithm. The original LPE method sets all variances below the max variance in the ordered distribution of variances to the maximum variance. in LPEadj this option is turned off by default. The second option is to use a variance adjustment based on sample size rather than pi/2. By default the LPEadj uses the sample size based variance adjustment.

Author
Carl Murie <carl.murie@mcgill.ca>, Robert Nadon <robert.nadon@mcgill.ca>
Date of publication
None
Maintainer
Carl Murie <carl.murie@mcgill.ca>
License
LGPL
Version
1.34.0

View on Bioconductor

Man pages

adjBaseOlig.error
Evaluates LPE variance function of M for quantiles of A...
adjBaseOlig.error.step1
Evaluates LPE variance function of M for quantiles of A...
adjBaseOlig.error.step2
Evaluates LPE variance function of M for quantiles of A...
calculateLpeAdj
Evaluates local pooled error significance test with user...
lpeAdj
High level lpeAdj function that executes the adjusted local...

Files in this package

LPEadj/DESCRIPTION
LPEadj/NAMESPACE
LPEadj/R
LPEadj/R/LPEadj.R
LPEadj/build
LPEadj/build/vignette.rds
LPEadj/inst
LPEadj/inst/doc
LPEadj/inst/doc/LPEadj.R
LPEadj/inst/doc/LPEadj.Rnw
LPEadj/inst/doc/LPEadj.pdf
LPEadj/man
LPEadj/man/adjBaseOlig.error.Rd
LPEadj/man/adjBaseOlig.error.step1.Rd
LPEadj/man/adjBaseOlig.error.step2.Rd
LPEadj/man/calculateLpeAdj.Rd
LPEadj/man/lpeAdj.Rd
LPEadj/vignettes
LPEadj/vignettes/LPEadj.Rnw
LPEadj/vignettes/fig
LPEadj/vignettes/fig/FPRPvalHist10Reps4.EPS
LPEadj/vignettes/fig/FPRPvalHist10Reps4.jpg
LPEadj/vignettes/fig/HGU95GreyScale1.eps
LPEadj/vignettes/fig/HGU95GreyScale1.jpg
LPEadj/vignettes/fig/MeanMedianVar3.eps
LPEadj/vignettes/fig/MeanMedianVar3.jpg
LPEadj/vignettes/isorot.sty