LPEadj: A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.

Two options are added to the LPE algorithm. The original LPE method sets all variances below the max variance in the ordered distribution of variances to the maximum variance. in LPEadj this option is turned off by default. The second option is to use a variance adjustment based on sample size rather than pi/2. By default the LPEadj uses the sample size based variance adjustment.

AuthorCarl Murie <carl.murie@mcgill.ca>, Robert Nadon <robert.nadon@mcgill.ca>
Date of publicationNone
MaintainerCarl Murie <carl.murie@mcgill.ca>
LicenseLGPL
Version1.34.0

View on Bioconductor

Files

LPEadj/DESCRIPTION
LPEadj/NAMESPACE
LPEadj/R
LPEadj/R/LPEadj.R
LPEadj/build
LPEadj/build/vignette.rds
LPEadj/inst
LPEadj/inst/doc
LPEadj/inst/doc/LPEadj.R
LPEadj/inst/doc/LPEadj.Rnw
LPEadj/inst/doc/LPEadj.pdf
LPEadj/man
LPEadj/man/adjBaseOlig.error.Rd LPEadj/man/adjBaseOlig.error.step1.Rd LPEadj/man/adjBaseOlig.error.step2.Rd LPEadj/man/calculateLpeAdj.Rd LPEadj/man/lpeAdj.Rd
LPEadj/vignettes
LPEadj/vignettes/LPEadj.Rnw
LPEadj/vignettes/fig
LPEadj/vignettes/fig/FPRPvalHist10Reps4.EPS
LPEadj/vignettes/fig/FPRPvalHist10Reps4.jpg
LPEadj/vignettes/fig/HGU95GreyScale1.eps
LPEadj/vignettes/fig/HGU95GreyScale1.jpg
LPEadj/vignettes/fig/MeanMedianVar3.eps
LPEadj/vignettes/fig/MeanMedianVar3.jpg
LPEadj/vignettes/isorot.sty

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.