Files in LedPred
Learning from DNA to Predict Enhancers
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
data/feature.ranking.rda
data/crm.features.rda
R/rankFeatures.R
R/ParameterTuner.R
R/FeatureNbTuner.R
R/scoreData.R
R/createModel.R
R/FeatureRanking.R
R/ledpred.R
R/Data.R
R/ModelPerformance.R
R/Model.R
R/mcTune.R
R/mapFeaturesToCRMs.R
R/LedPredClass.R
R/evaluateModelPerformance.R
R/tuneFeatureNb.R
vignettes/LedPred.Rnw
vignettes/_ROCR_perf.png
vignettes/_kappa_measures.png
vignettes/_c_g_eval.png
vignettes/figs/vignette_kappa_measures.png
vignettes/figs/vignette_c_g_eval.png
vignettes/figs/vignette_ROC_perf.png
man/rankFeatures.Rd
man/feature.ranking.Rd
man/createModel.Rd
man/scoreData.Rd
man/LedPred.Rd
man/evaluateModelPerformance.Rd
man/tuneFeatureNb.Rd
man/mapFeaturesToCRMs.Rd
man/mcTune.Rd
man/crm.features.Rd
tests/testthat.R
tests/testthat/test-iris2_ModelPerformance.R
tests/testthat/test-iris2_FeatureNbTuner.R
tests/testthat/test-iris2_ParameterTuner.R
tests/testthat/test-iris2_LedPred.R
tests/testthat/test-iris2_FeatureRanking.R
tests/testthat/test-iris2_ModelCreate.R
tests/testthat/test-iris2_Data.R
tests/testthat/data_iris2/y.rda
tests/testthat/data_iris2/feature.ranking.rda
tests/testthat/data_iris2/x.rda
tests/testthat/data_iris2/iris2.rda
inst/CITATION
inst/doc/LedPred.Rnw
inst/doc/LedPred.pdf
inst/doc/LedPred.R
inst/extdata/negative_50CADenhancers.bed
inst/extdata/positive_50CADenhancers.bed
inst/extdata/259_matrices_lightNames.tf
inst/extdata/prediction_small.bed
inst/extdata/2nt_intergenic_droso.freq
inst/extdata/ngs/docBoundCRM.bed
inst/extdata/ngs/pmadBoundCRM.bed
inst/extdata/ngs/dtcfBoundCRM.bed
inst/extdata/ngs/K4me1_E_F_6_8h_H3_subtracted_reduced.wig
inst/extdata/ngs/pnrBoundCRM.bed
inst/extdata/ngs/tinBoundCRM.bed
inst/extdata/testdata/23From66ActiveEnhancersInMesoAt68h_2seqs.bed
inst/extdata/testdata/feature_rank.txt
inst/extdata/testdata/230NonActivesEnhancers4_8h_2seqs.bed
inst/extdata/testdata/feature_nb.txt
inst/extdata/testdata/test_ngs_bed_small/positive_2seqs.bed
inst/extdata/testdata/test_ngs_bed_small/negative_5seqs.bed
inst/extdata/testdata/test_ngs_bed_small/mfile2.tf
inst/extdata/testdata/test_ngs_bed_small/outdir_bak/feature_matrix.tab
inst/extdata/testdata/test_ngs_bed_small/ngs_beds/ngs2.bed
inst/extdata/testdata/test_ngs_bed_small/ngs_beds/ngs.bed
