Files in LymphoSeq

Analyze high-throughput sequencing of T and B cell receptors

README.md R/uniqueSeqs.R R/topFreq.R R/commonSeqsPlot.R R/mergeFiles.R R/commonSeqs.R R/pairwisePlot.R R/searchPublished.R R/cloneTrack.R R/exportFasta.R R/phyloTree.R R/commonSeqsBar.R R/productiveSeq.R R/lorenzCurve.R R/similarityMatrix.R R/differentialAbundance.R R/clonalRelatedness.R R/productive.R R/alignSeq.R R/readImmunoSeq.R R/searchSeq.R R/topSeqsPlot.R R/bhattacharyyaCoefficient.R R/chordDiagramVDJ.R R/bhattacharyyaMatrix.R R/commonSeqsVenn.R R/geneFreq.R R/topSeqs.R R/clonality.R R/similarityScore.R R/seqMatrix.R R/removeSeq.R vignettes/LymphoSeq.Rmd man/readImmunoSeq.Rd man/commonSeqs.Rd man/topSeqs.Rd man/productive.Rd man/topFreq.Rd man/pairwisePlot.Rd man/bhattacharyyaCoefficient.Rd man/exportFasta.Rd man/cloneTrack.Rd man/searchSeq.Rd man/clonality.Rd man/chordDiagramVDJ.Rd man/uniqueSeqs.Rd man/productiveSeq.Rd man/removeSeq.Rd man/differentialAbundance.Rd man/similarityMatrix.Rd man/commonSeqsBar.Rd man/commonSeqsPlot.Rd man/phyloTree.Rd man/mergeFiles.Rd man/topSeqsPlot.Rd man/clonalRelatedness.Rd man/similarityScore.Rd man/geneFreq.Rd man/commonSeqsVenn.Rd man/searchPublished.Rd man/lorenzCurve.Rd man/seqMatrix.Rd man/bhattacharyyaMatrix.Rd man/alignSeq.Rd inst/doc/LymphoSeq.R inst/doc/LymphoSeq.Rmd