uniqueSeqs: Unique sequences

In LymphoSeq: Analyze high-throughput sequencing of T and B cell receptors

Description

Aggregates all productive sequences within a list of data frames by count.

Usage

uniqueSeqs(productive.aa)

Arguments

productive.aa

A list data frames of of productive amino acid sequences imported using the function LymphoSeq function productiveSeq where the aggregate parameter was set to "aminoAcid".

Value

A data frame of unique amino acid sequences from the list of data frames aggregated by count.

Examples

file.path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq")

file.list <- readImmunoSeq(path = file.path)

productive.aa <- productiveSeq(file.list = file.list, aggregate = "aminoAcid")

unique.seqs <- uniqueSeqs(productive.aa = productive.aa)

LymphoSeq documentation built on Nov. 8, 2020, 8:09 p.m.