Files in MACPET
Model based analysis for paired-end data
NAMESPACE
DESCRIPTION
build/vignette.rds
src/Stage_0_FastqFilteringSubFunctions.cpp
src/Stage_4_InteractionsSubFunctions.cpp
src/RcppExports.cpp
src/Stage_3_PeakFinderSubFunctions.cpp
R/MACPET_pkg.R
R/Stage_4_InteractionsFunctions.R
R/sysdata.rda
R/RcppExports.R
R/Stage_3_PeakFinderFunctions.R
R/Stage_1_MappingFunctions.R
R/AnalysisStatistics.R
R/ConvertToPSelf-methods.R
R/Stage_2_PETClassificationFunctions.R
R/ConvertToPE_BAM.R
R/MACPETUlt.R
R/GetSignInteractions-methods.R
R/GetShortestPath-methods.R
R/summary-methods.R
R/plot-methods.R
R/AllClasses.R
R/ALLData.R
R/exportPeaks-methods.R
R/TagsToGInteractions-methods.R
R/PeaksToNarrowPeak-methods.R
R/Stage_0_FilteringLinkersFunctions.R
R/InputChecks.R
R/PeaksToGRanges-methods.R
vignettes/MACPET.Rmd
man/MACPET_pintraData.rda.Rd
man/GenomeMap-class.Rd
man/MACPETUlt.Rd
man/SampleChIAPETDataRead_2.bam.Rd
man/plot.Rd
man/PSelf-class.Rd
man/SampleChIAPETDataRead_1.bam.Rd
man/MACPET.Rd
man/ConvertToPSelf.Rd
man/exportPeaks.Rd
man/SampleChIAPETData.bam.Rd
man/PSFit-class.Rd
man/MACPET_pinterData.rda.Rd
man/GetSignInteractions.Rd
man/ConvertToPE_BAM.Rd
man/PeaksToNarrowPeak.Rd
man/summary.Rd
man/TagsToGInteractions.Rd
man/PIntra-class.Rd
man/MACPET_psfitData.rda.Rd
man/MACPET_GenomeMapData.rda.Rd
man/PInter-class.Rd
man/MACPET_pselfData.rda.Rd
man/GetShortestPath.Rd
man/PeaksToGRanges.Rd
man/AnalysisStatistics.Rd
inst/NEWS
inst/CITATION
inst/REFERENCES.bib
inst/doc/MACPET.Rmd
inst/doc/MACPET.R
inst/doc/MACPET.pdf
inst/extdata/SampleChIAPETDataRead_1.bam
inst/extdata/SampleChIAPETDataRead_2.bam
inst/extdata/SampleChIAPETData.bam
inst/extdata/MACPET_pintraData.rda
inst/extdata/MACPET_GenomeMapData.rda
inst/extdata/MACPET_psfitData.rda
inst/extdata/MACPET_pinterData.rda
inst/extdata/MACPET_pselfData.rda
inst/include/MACPET.h
inst/include/MACPET_RcppExports.h
