PSelf-class: PSelf S4 Class
In MACPET: Model based analysis for paired-end data
Description
Details
Author(s)
References
See Also
Description
PSelf class in a S4 class which
inherits from the
GInteractions class and it contains Self-ligated
PETs from ChIA-PET experiment. Furthermore it also contains the following in the
metadata field:
Self_info A data.frame with the count statistics for the total PETs in each chromosome.
SLmeanThe mean size of the PETs in the data.
MaxSizeMaximum size of self-ligated PETs.
MinSizeMinimum size of self-ligated PETs.
Details
PSelf class is created by
the MACPETUlt
function at Stage 2.
Author(s)
Ioannis Vardaxis, ioannis.vardaxis@ntnu.no
References
Vardaxis I, Drabl<c3><b8>s F, Rye M and Lindqvist BH (2018). MACPET: Model-based Analysis for ChIA-PET.
To be published.
See Also
AnalysisStatistics, plot,
summary,
MACPETUlt, ConvertToPSelf
MACPET documentation built on Nov. 8, 2020, 5:47 p.m.
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Description Details Author(s) References See Also
Description
PSelf class in a S4 class which
inherits from the
GInteractions class and it contains Self-ligated
PETs from ChIA-PET experiment. Furthermore it also contains the following in the
metadata field:
Self_infoA data.frame with the count statistics for the total PETs in each chromosome.
SLmeanThe mean size of the PETs in the data.
MaxSizeMaximum size of self-ligated PETs.
MinSizeMinimum size of self-ligated PETs.
Details
PSelf class is created by
the MACPETUlt
function at Stage 2.
Author(s)
Ioannis Vardaxis, ioannis.vardaxis@ntnu.no
References
Vardaxis I, Drabl<c3><b8>s F, Rye M and Lindqvist BH (2018). MACPET: Model-based Analysis for ChIA-PET. To be published.
See Also
AnalysisStatistics, plot,
summary,
MACPETUlt, ConvertToPSelf
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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