API for MIGSA
Massive and Integrative Gene Set Analysis

Global functions
$,MIGSAres-method	Man page
ExprData-class	Man page
FitOptions	Man page Source code
FitOptions-class	Man page
FitOptions.data.frame	Man page Source code
FitOptions.default	Man page Source code
GSEAparams	Man page
GSEAparams-class	Man page
Genesets-enrichr	Man page
IGSAinput	Man page
IGSAinput-class	Man page
IGSAinput-getterSetters	Man page
MIGSA	Man page
MIGSA,list	Man page
MIGSA,list-method	Man page
MIGSAPackage	Man page
MIGSAmGSZ	Man page
MIGSAmGSZ,matrix,list,vector-method	Man page
MIGSAres	Source code
MIGSAres-GOanalysis	Man page
MIGSAres-class	Man page
MIGSAres-common	Man page
MIGSAres-genes	Man page
MIGSAres-plots	Man page
MIGSAres.data.table	Source code
MIGSAres.list	Source code
SEAparams	Man page
SEAparams-class	Man page
[,MIGSAres,ANY,ANY,ANY-method	Man page
as.Genesets	Man page
as.Genesets,list-method	Man page
as.data.frame,MIGSAres	Man page
as.data.frame,MIGSAres-method	Man page
as.data.table.GSEAres	Source code
as.data.table.GenesetsRes	Source code
as.data.table.IGSAres	Source code
as.data.table.SEAres	Source code
bcMigsaRes	Man page
colnames,MIGSAres	Man page
colnames,MIGSAres-method	Man page
countHygeVarMean	Source code
countProbSum	Source code
dim,MIGSAres-method	Man page
downloadEnrichrGeneSets	Man page
downloadEnrichrGeneSets,ANY-method	Man page
downloadEnrichrGeneSets,character-method	Man page
enrichrGeneSets	Man page
enrichrGeneSets,ANY-method	Man page
enrichrGeneSets,character-method	Man page
exprData	Man page
exprData,IGSAinput-method	Man page
exprData<-	Man page
exprData<-,IGSAinput-method	Man page
filterByGenes	Man page
filterByGenes,MIGSAres,character-method	Man page
filterInputs	Source code
fitOptions	Man page
fitOptions,IGSAinput-method	Man page
fitOptions<-	Man page
fitOptions<-,IGSAinput-method	Man page
geneSetBarplot	Man page
geneSetBarplot,MIGSAres-method	Man page
geneSetsFromFile	Man page
geneSetsFromFile,character-method	Man page
geneSetsList	Man page
geneSetsList,IGSAinput-method	Man page
geneSetsList<-	Man page
geneSetsList<-,IGSAinput-method	Man page
genesBarplot	Man page
genesBarplot,MIGSAres-method	Man page
genesHeatmap	Man page
genesHeatmap,MIGSAres-method	Man page
genesInSets	Man page
genesInSets,MIGSAres-method	Man page
getAdditionalInfo	Man page
getAdditionalInfo,MIGSAres	Man page
getAdditionalInfo,MIGSAres-method	Man page
getDEGenes	Man page
getDEGenes,IGSAinput	Man page
getDEGenes,IGSAinput-method	Man page
getEnrichScore	Source code
getHeights	Man page
getHeights,character-method	Man page
getPvalues	Source code
getRankings	Source code
goTree	Man page
goTree,MIGSAres-method	Man page
goTree,data.frame-method	Man page
gseaParams	Man page
gseaParams,IGSAinput-method	Man page
gseaParams<-	Man page
gseaParams<-,IGSAinput-method	Man page
head,MIGSAres	Man page
head,MIGSAres-method	Man page
loadGo	Man page
loadGo,character-method	Man page
logEVcdf	Source code
mGszEbayes	Source code
merge,MIGSAres,MIGSAres	Man page
merge,MIGSAres,MIGSAres-method	Man page
migsaGoTree	Man page
migsaGoTree,MIGSAres-method	Man page
migsaHeatmap	Man page
migsaHeatmap,MIGSAres-method	Man page
migsaHeatmap,matrix-method	Man page
migsaRes	Man page
name	Man page
name,IGSAinput-method	Man page
name<-	Man page
name<-,IGSAinput-method	Man page
seaParams	Man page
seaParams,IGSAinput-method	Man page
seaParams<-	Man page
seaParams<-,IGSAinput-method	Man page
setEnrCutoff	Man page
setEnrCutoff,MIGSAres,numeric-method	Man page
show,MIGSAres	Man page
show,MIGSAres-method	Man page
sumVarMeanCalc	Source code
summary	Man page
summary,GSEAparams-method	Man page
summary,IGSAinput-method	Man page
summary,MIGSAres-method	Man page
summary,SEAparams-method	Man page
summary.GSEAparams	Man page Source code
summary.IGSAinput	Man page Source code
summary.MIGSAres	Man page Source code
summary.SEAparams	Man page Source code
tail,MIGSAres	Man page
tail,MIGSAres-method	Man page
voomLimaRank	Source code
zVarCalc	Source code