MSEADb is the simple class for providing the relationship between
PathBank pathway IDs and metabolite IDs contained in the pathway.
It provides the database connection and
easily accessible with
select. Some users may use additional functions such as
species for much complex data acquisition.
columns shows which kinds of data can be returned for the
keytypes allows the user to discover which keytypes can be
passed in to
keys and the
keys returns keys for the database contained in the
MSEADb object . This method is already documented in the keys
manual page but is mentioned again here because it's usage with
select is so intimate. By default it will return the primary
keys for the database, but if used with the
it will return the keys from that keytype.
select will retrieve the data as a data.frame based on
parameters for selected
dbconn returns the connection with database in the package.
dbfile returns the absolute path sqlite file is saved.
dbschema returns the database schema.
dbInfo returns the many meta information about the package.
species returns the species name.
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