MSGFgui: A shiny GUI for MSGFplus

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author
Thomas Lin Pedersen
Date of publication
None
Maintainer
Thomas Lin Pedersen <thomasp85@gmail.com>
License
GPL (>= 2)
Version
1.8.0

View on Bioconductor

Man pages

currentData
Gets the result data currently in use by another R session...
MSGFgui
Start MSGFgui in the default browser
MSGFgui-package
MSGFgui: A graphic user interface for MSGFplus

Files in this package

MSGFgui/DESCRIPTION
MSGFgui/NAMESPACE
MSGFgui/NEWS
MSGFgui/R
MSGFgui/R/MSGFgui-package.R
MSGFgui/R/MSGFgui.R
MSGFgui/R/server.R
MSGFgui/R/server_functions.R
MSGFgui/README.md
MSGFgui/build
MSGFgui/build/vignette.rds
MSGFgui/inst
MSGFgui/inst/doc
MSGFgui/inst/doc/Using_MSGFgui.R
MSGFgui/inst/doc/Using_MSGFgui.Rmd
MSGFgui/inst/doc/Using_MSGFgui.html
MSGFgui/inst/extdata
MSGFgui/inst/extdata/AAtable.csv
MSGFgui/inst/extdata/adductTable.csv
MSGFgui/inst/server.R
MSGFgui/inst/www
MSGFgui/inst/www/css
MSGFgui/inst/www/css/style.css
MSGFgui/inst/www/icons
MSGFgui/inst/www/icons/R.png
MSGFgui/inst/www/icons/browser-download-2.svg
MSGFgui/inst/www/icons/bulb-2.svg
MSGFgui/inst/www/icons/database-add.svg
MSGFgui/inst/www/icons/database-remove.svg
MSGFgui/inst/www/icons/excel.png
MSGFgui/inst/www/icons/font-awesome-4.1.0
MSGFgui/inst/www/icons/font-awesome-4.1.0/css
MSGFgui/inst/www/icons/font-awesome-4.1.0/css/font-awesome.css
MSGFgui/inst/www/icons/font-awesome-4.1.0/css/font-awesome.min.css
MSGFgui/inst/www/icons/font-awesome-4.1.0/fonts
MSGFgui/inst/www/icons/font-awesome-4.1.0/fonts/FontAwesome.otf
MSGFgui/inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.eot
MSGFgui/inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.svg
MSGFgui/inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.ttf
MSGFgui/inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.woff
MSGFgui/inst/www/icons/settings-3.svg
MSGFgui/inst/www/icons/txt.png
MSGFgui/inst/www/index.html
MSGFgui/inst/www/library
MSGFgui/inst/www/library/d3.min.js
MSGFgui/inst/www/library/d3.slider.js
MSGFgui/inst/www/library/jquery.ba-throttle-debounce.min.js
MSGFgui/inst/www/scripts
MSGFgui/inst/www/scripts/UI.js
MSGFgui/inst/www/scripts/dataModel.js
MSGFgui/inst/www/scripts/plots.js
MSGFgui/inst/www/scripts/tooltip.js
MSGFgui/man
MSGFgui/man/MSGFgui-package.Rd
MSGFgui/man/MSGFgui.Rd
MSGFgui/man/currentData.Rd
MSGFgui/tests
MSGFgui/tests/test-all.R
MSGFgui/tests/testthat
MSGFgui/tests/testthat/test_data-tables.R
MSGFgui/tests/testthat/test_modStringToMod.R
MSGFgui/tests/testthat/test_peptide-functions.R
MSGFgui/tests/testthat/test_sampleID.R
MSGFgui/vignettes
MSGFgui/vignettes/Using_MSGFgui.Rmd
MSGFgui/vignettes/screenshots
MSGFgui/vignettes/screenshots/analyse.png
MSGFgui/vignettes/screenshots/filter.png
MSGFgui/vignettes/screenshots/overview.png
MSGFgui/vignettes/screenshots/peptide.png
MSGFgui/vignettes/screenshots/protein.png
MSGFgui/vignettes/screenshots/samples.png
MSGFgui/vignettes/screenshots/scans.png
MSGFgui/vignettes/screenshots/tabbar.png
MSGFgui/vignettes/styles.css