MSGFgui: A shiny GUI for MSGFplus
Version 1.10.0

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

AuthorThomas Lin Pedersen
Bioconductor views GUI MassSpectrometry Proteomics Visualization
Date of publicationNone
MaintainerThomas Lin Pedersen <thomasp85@gmail.com>
LicenseGPL (>= 2)
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFgui")

Getting started

Package overview
README.md
Using MSGFgui

Popular man pages

currentData: Gets the result data currently in use by another R session...
MSGFgui: Start MSGFgui in the default browser
MSGFgui-package: MSGFgui: A graphic user interface for MSGFplus
See all...

All man pages Function index File listing

Man pages

currentData: Gets the result data currently in use by another R session...
MSGFgui: Start MSGFgui in the default browser
MSGFgui-package: MSGFgui: A graphic user interface for MSGFplus

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/MSGFgui-package.R
R/MSGFgui.R
R/server.R
R/server_functions.R
README.md
build
build/vignette.rds
inst
inst/doc
inst/doc/Using_MSGFgui.R
inst/doc/Using_MSGFgui.Rmd
inst/doc/Using_MSGFgui.html
inst/extdata
inst/extdata/AAtable.csv
inst/extdata/adductTable.csv
inst/server.R
inst/www
inst/www/css
inst/www/css/style.css
inst/www/icons
inst/www/icons/R.png
inst/www/icons/browser-download-2.svg
inst/www/icons/bulb-2.svg
inst/www/icons/database-add.svg
inst/www/icons/database-remove.svg
inst/www/icons/excel.png
inst/www/icons/font-awesome-4.1.0
inst/www/icons/font-awesome-4.1.0/css
inst/www/icons/font-awesome-4.1.0/css/font-awesome.css
inst/www/icons/font-awesome-4.1.0/css/font-awesome.min.css
inst/www/icons/font-awesome-4.1.0/fonts
inst/www/icons/font-awesome-4.1.0/fonts/FontAwesome.otf
inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.eot
inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.svg
inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.ttf
inst/www/icons/font-awesome-4.1.0/fonts/fontawesome-webfont.woff
inst/www/icons/settings-3.svg
inst/www/icons/txt.png
inst/www/index.html
inst/www/library
inst/www/library/d3.min.js
inst/www/library/d3.slider.js
inst/www/library/jquery.ba-throttle-debounce.min.js
inst/www/scripts
inst/www/scripts/UI.js
inst/www/scripts/dataModel.js
inst/www/scripts/plots.js
inst/www/scripts/tooltip.js
man
man/MSGFgui-package.Rd
man/MSGFgui.Rd
man/currentData.Rd
tests
tests/test-all.R
tests/testthat
tests/testthat/test_data-tables.R
tests/testthat/test_modStringToMod.R
tests/testthat/test_peptide-functions.R
tests/testthat/test_sampleID.R
vignettes
vignettes/Using_MSGFgui.Rmd
vignettes/screenshots
vignettes/screenshots/analyse.png
vignettes/screenshots/filter.png
vignettes/screenshots/overview.png
vignettes/screenshots/peptide.png
vignettes/screenshots/protein.png
vignettes/screenshots/samples.png
vignettes/screenshots/scans.png
vignettes/screenshots/tabbar.png
vignettes/styles.css
MSGFgui documentation built on May 20, 2017, 9:34 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.