Man pages for MWASTools
MWASTools: an integrated pipeline to perform metabolome-wide association studies
| CV_filter | Filter metabolic data by CV |
| JBA_binning | Binning of pJRES spectra |
| JBA_corDistribution | Setting the ct threshold for JBA |
| JBA_plotBins | Visualization of JBA bins |
| KEGG_metabolic_paths | KEGG human metabolic pathways |
| metabo_SE | NMR plasma metabolic profiles dataset |
| MS_data | Simulated LC-MS features |
| MWAS_barplot | Visualize MWAS results in a bar plot |
| MWAS_bootstrapping | MWAS bootstrap resampling |
| MWAS_filter | Filter MWAS results by p-value and/or CV |
| MWAS_heatmap | Visualize MWAS results as a multiple-phenotype heatmap |
| MWAS_KEGG_network | Build a KEGG-based metabolic network |
| MWAS_KEGG_pathways | Map metabolites into KEGG pathways |
| MWAS_KEGG_shortestpaths | Build a shortest-path metabolic subnetwork |
| MWAS_network | Visualize MWAS results in a correlation-based metabolic... |
| MWAS_scatterplotMS | Visualize MWAS results in MS-based scatter plot |
| MWAS_skylineNMR | Visualize MWAS results in an NMR-skyline plot |
| MWAS_stats | Metabolome-Wide Associations |
| MWAS_SummarizedExperiment | Create a SummarizeExperiment object |
| plot_spectraNMR | Plot NMR spectra |
| QC_CV | Calculate coefficients of variation |
| QC_CV_scatterplot | Plot MS-based scatter plot colored based on CV |
| QC_CV_specNMR | Plot NMR spectrum colored based on CV |
| QC_PCA | Principal Component Analysis |
| QC_PCA_scoreplot | PCA score plot |
| STOCSY_NMR | Statistical Total Correlation Spectroscopy - Academic use... |
| targetMetabo_SE | Target NMR metabolites dataset |
