MethPed_sample: Sample dataset to MethPed package.

In MethPed: A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes

Description

Methylation beta-values generated with the Infinium HumanMethylation450 BeadChips (Illumina).

Usage

data(MethPed_sample)

Format

A data frame with 468821 probes and 2 tumor samples

Value

DNA Methylation beta-values

References

[1] Anna Danielsson, Szil<c3><a1>rd Nemes, Magnus Tisell, Birgitta Lannering, Claes Nordborg, Magnus Sabel, and Helena Car<c3><a9>n. "MethPed: A DNA Methylation Classifier Tool for the Identification of Pediatric Brain Tumor Subtypes". Clinical Epigenetics 2015, 7:62, 2015

See Also

See http://www.clinicalepigeneticsjournal.com/content/7/1/62 for more details.

Examples

#################### Loading and view sample data
data(MethPed_sample)
head(MethPed_sample)

#################### Check dimention of sample data
dim(MethPed_sample)  # Check number of probes and samples in data

#################### Checking missing value in the data
missingIndex <- checkNA(MethPed_sample)

MethPed documentation built on Nov. 8, 2020, 7:39 p.m.