summarizedData-class: container for summarized Illumina Human DNA Methylation array...

In MethylAid: Visual and interactive quality control of large Illumina DNA Methylation array data sets

Description

container for summarized Illumina Human DNA Methylation array data

Slots

targets:

Object of class "data.frame" containing targets information.

controls:

Object of class "data.frame" containing quality control probe information.

Rcontrols:

Object of class "matrix" containing quality control probe intensities for the Red channel.

Gcontrols:

Object of class "matrix" containing quality control probe intensities for the Grn channel.

DPfreq:

Object of class "vector" containing frequencies of probes above background.

MU:

Object of class "matrix" containing Methylated and Unmethylated internsities.

plotdata:

Object of class "list" containing data to make plotting efficient.

MethylAid documentation built on Nov. 8, 2020, 8:20 p.m.