API for MethylSeekR
Segmentation of Bis-seq data
| Global functions | |
|---|---|
| MethylSeekR | Man page |
| MethylSeekR-package | Man page |
| PMDviterbiSegmentation | Source code |
| calculateAlphaDistr | Source code |
| calculateFDRs | Man page Source code |
| createGRangesObjectPMDSegmentation | Source code |
| plotAlphaDistributionOneChr | Man page Source code |
| plotFinalSegmentation | Man page Source code |
| plotPMDSegmentation | Man page Source code |
| readMethylome | Man page Source code |
| readSNPTable | Man page Source code |
| removeSNPs | Man page Source code |
| savePMDSegments | Man page Source code |
| saveUMRLMRSegments | Man page Source code |
| segmentPMDs | Man page Source code |
| segmentUMRsLMRs | Man page Source code |
| trainPMDHMM | Source code |
