Man pages for MethylSeekR
Segmentation of Bis-seq data

calculateFDRsDetermine false discovery rate
MethylSeekR-packageSegmentation of Bis-seq methylation data
plotAlphaDistributionOneChrCalculate and plot alpha distribution.
plotFinalSegmentationPlotting final segmentation
plotPMDSegmentationPlotting the PMD Segmentation
readMethylomeLoad Bis-seq data
readSNPTableLoad SNP table
removeSNPsRemove CpGs overlapping SNPs
savePMDSegmentsSave PMD segments
saveUMRLMRSegmentsSave UMR and LMR segments
segmentPMDsPMD segmenter
segmentUMRsLMRsIdentify UMRs and LMRs
MethylSeekR documentation built on Nov. 17, 2017, 1:06 p.m.