Man pages for MethylSeekR
Segmentation of Bis-seq data
| calculateFDRs | Determine false discovery rate |
| MethylSeekR-package | Segmentation of Bis-seq methylation data |
| plotAlphaDistributionOneChr | Calculate and plot alpha distribution. |
| plotFinalSegmentation | Plotting final segmentation |
| plotPMDSegmentation | Plotting the PMD Segmentation |
| readMethylome | Load Bis-seq data |
| readSNPTable | Load SNP table |
| removeSNPs | Remove CpGs overlapping SNPs |
| savePMDSegments | Save PMD segments |
| saveUMRLMRSegments | Save UMR and LMR segments |
| segmentPMDs | PMD segmenter |
| segmentUMRsLMRs | Identify UMRs and LMRs |
