Files in Modstrings

Working with modified nucleotide sequences

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/MOD_RNA_DICT_MODOMICS.rda

data/modsDNA.rda

data/modsRNA.rda

data/MOD_RNA_DICT_TRNADB.rda

R/Modstrings-modifyNucleotide.R R/Modstrings-external-C-calls.R R/Modstrings-ModStringSetList.R R/Modstrings-MaskedModString.R R/Modstrings-replaceLetterAt.R R/AllGenerics.R R/Modstrings-ModStringViews.R R/Modstrings-letterFrequency.R R/utils.R R/Modstrings-sanitize.R R/Modstrings-ModStringSet.R R/Modstrings-QualityScaledModStringSet.R R/Modstrings-seqtype.R R/Modstrings-ModStringCodec-data.R R/Modstrings-ModStringCodec.R R/zzz.R R/Modstrings-external-functions.R R/Modstrings-separate.R R/datasets.R R/Modstrings-ModString.R R/Modstrings-ModStringSet-io.R R/Modstrings.R vignettes/Modstrings.Rmd vignettes/ModDNAString-alphabet.Rmd

vignettes/references.bib

vignettes/ModRNAString-alphabet.Rmd man/ModStringSet-io.Rd man/ModString.Rd man/letterFrequency.Rd man/ModStringSetList.Rd man/ModStringViews.Rd man/Modstrings.Rd man/ModRNAString.Rd man/sanitizeInput.Rd man/replaceLetterAt.Rd man/ModStringSet.Rd man/ModDNAString.Rd man/separate.Rd man/alphabet.Rd man/Modstrings-internals.Rd man/QualityScaledModStringSet.Rd man/modifyNucleotides.Rd man/MaskedModString.Rd tests/testthat.R tests/testthat/test-0ModString.R tests/testthat/test-1ModString-io.R tests/testthat/test-0ModString-Codec.R tests/testthat/test-0QualityModString.R tests/testthat/test-3seq-changes.R tests/testthat/test-5MaskedModString.R tests/testthat/test-2matching.R tests/testthat/test-4separate.R tests/testthat/test-2comparison.R tests/testthat/test-5sanitize.R

tests/testthat/test_DNA_codes.txt

tests/testthat/test-1seq-features.R

inst/CITATION

inst/doc/ModDNAString-alphabet.html

inst/doc/ModRNAString-alphabet.R inst/doc/ModDNAString-alphabet.R inst/doc/Modstrings.Rmd

inst/doc/ModRNAString-alphabet.html

inst/doc/ModDNAString-alphabet.Rmd inst/doc/ModRNAString-alphabet.Rmd inst/doc/Modstrings.R

inst/doc/Modstrings.html

inst/extdata/test.fasta

inst/extdata/tRNAdb_modifications.txt

inst/extdata/DNAmod_modifications.txt

inst/extdata/modomics_modifications.txt

inst/extdata/Mod_RNA_codes.txt

inst/extdata/Mod_DNA_codes.txt

Modstrings documentation built on Nov. 8, 2020, 7:51 p.m.