A.gro: Transcription rate data from yeast

In MultiBaC: Multiomic Batch effect Correction

Description

This data set gives the transcription rates of 200 genes from yeast measured at two different conditions (glucose vs glucose starvation).

Usage

multiyeast

Format

A matrix containing 6 rows and 200 variables.

Source

Gene Expression Omnimus: GSE11521

References

@articleJE1, author = Pelechano, Vicent and P\'erez-Ort\'in, Jos\'e E., title = There is a steady-state transcriptome in exponentially growing yeast cells, journal = Yeast, volume = 27, number = 7, pages = 413-422, keywords = transcription rate, steady state, transcriptome, Saccharomyces cerevisiae, mRNA stability, doi = 10.1002/yea.1768, url = https://onlinelibrary.wiley.com/doi/abs/10.1002/yea.1768, eprint = https://onlinelibrary.wiley.com/doi/pdf/10.1002/yea.1768, year = 2010

@articleJE2, Annote = doi: 10.1016/j.molcel.2004.06.004, Author = Garc\'ia-Mart\'inez, Jos\'e and Aranda, Agust\'in and P\'erez-Ort\'in, Jos\'eE, Booktitle = Molecular Cell, Date = 2004/07/23, Date-Added = 2019-01-29 12:15:03 +0000, Date-Modified = 2019-01-29 12:15:03 +0000, Doi = 10.1016/j.molcel.2004.06.004, Isbn = 1097-2765, Journal = Molecular Cell, M3 = doi: 10.1016/j.molcel.2004.06.004, Month = 2019/01/29, Number = 2, Pages = 303–313, Publisher = Elsevier, Title = Genomic Run-On Evaluates Transcription Rates for All Yeast Genes and Identifies Gene Regulatory Mechanisms, Ty = JOUR, Url = https://doi.org/10.1016/j.molcel.2004.06.004, Volume = 15, Year = 2004, Year1 = 2004, Bdsk-Url-1 = https://doi.org/10.1016/j.molcel.2004.06.004, Bdsk-Url-2 = http://dx.doi.org/10.1016/j.molcel.2004.06.004

@articleJE3, An = 21103382, Author = Pelechano, Vicent and Ch\'avez, Sebasti\'an and P\'erez-Ort\'in, Jos\'e E., Date = 2010/11/16, Date-Added = 2019-01-29 12:15:29 +0000, Date-Modified = 2019-01-29 12:15:29 +0000, Db = PubMed, Doi = 10.1371/journal.pone.0015442, Isbn = 1932-6203, J1 = PLoS One, Journal = PloS one, L2 = https://www.ncbi.nlm.nih.gov/pmc/PMC2982843/, Month = 11, Number = 11, Pages = e15442; e15442–e15442, Publisher = Public Library of Science, Title = A complete set of nascent transcription rates for yeast genes, Ty = JOUR, U1 = 21103382$[$pmid$]$, U2 = PMC2982843$[$pmcid$]$, Url = https://www.ncbi.nlm.nih.gov/pubmed/21103382, Volume = 5, Year = 2010, Bdsk-Url-1 = https://www.ncbi.nlm.nih.gov/pubmed/21103382, Bdsk-Url-2 = http://dx.doi.org/10.1371/journal.pone.0015442

MultiBaC documentation built on Nov. 8, 2020, 6:07 p.m.