wigfile_test: Example Wiggle Track Produced After ChIP-seq Data Analysis

In NarrowPeaks: Shape-based Analysis of Variation in ChIP-seq using Functional PCA

Description

Example of wiggle track produced after ChIP-seq data analysis. The data represents a small subset of a WIG file storing continuous-valued scores based on a Poisson test for the chromosome 1 of Arabidopsis thaliana (Kaufmann et al., 2010). It contains first 49515 lines of the WIG file for the complete experiment.

Format

Wiggle track format (WIG) data in a character vector.

Source

Gene Expression Omnibus GSE20176 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20176). Record from chromatin immunoprecipitation experiments wit AP1-specific antibodies followed by deep-sequencing in order to determine AP1 binding sites on a genome-wide scale in Arabidopsis thaliana.

References

Kaufmann et al. (2010) Orchestration of Floral Initiation by APETALA1. Science 328:85-89.

See Also

NarrowPeaks-package

Examples

 data(NarrowPeaks-dataset) 

NarrowPeaks documentation built on April 28, 2020, 6:51 p.m.