NetSAM: Network Seriation And Modularization

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The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Author
Jing Wang <jing.wang.2@vanderbilt.edu>
Date of publication
None
Maintainer
Bing Zhang <bing.zhang@vanderbilt.edu>
License
LGPL
Version
1.14.0

View on Bioconductor

Man pages

inputNetwork
A network example with graphNEL class
NetSAM
Network Seriation and Modularization
NetSAM-package
Network Seriation and Modularization

Files in this package

NetSAM/DESCRIPTION
NetSAM/NAMESPACE
NetSAM/R
NetSAM/R/NetSAM.R
NetSAM/R/zzz.R
NetSAM/build
NetSAM/build/vignette.rds
NetSAM/data
NetSAM/data/inputNetwork.rda
NetSAM/inst
NetSAM/inst/doc
NetSAM/inst/doc/NetSAM.R
NetSAM/inst/doc/NetSAM.Rnw
NetSAM/inst/doc/NetSAM.pdf
NetSAM/inst/extdata
NetSAM/inst/extdata/exampleNetwork.txt
NetSAM/inst/unitTests
NetSAM/inst/unitTests/test_NetSAM.R
NetSAM/man
NetSAM/man/NetSAM-package.Rd
NetSAM/man/NetSAM.Rd
NetSAM/man/inputNetwork.Rd
NetSAM/tests
NetSAM/tests/runTests.R
NetSAM/vignettes
NetSAM/vignettes/NetSAM.Rnw
NetSAM/vignettes/underscore.sty