NetSAM: Network Seriation And Modularization
Version 1.16.0

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

AuthorJing Wang <jing.wang.2@vanderbilt.edu>
Bioconductor views Network Visualization
Date of publicationNone
MaintainerBing Zhang <bing.zhang@vanderbilt.edu>
LicenseLGPL
Version1.16.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("NetSAM")

Getting started

Package overview

Popular man pages

inputNetwork: A network example with graphNEL class
NetSAM: Network Seriation and Modularization
NetSAM-package: Network Seriation and Modularization
See all...

All man pages Function index File listing

Man pages

inputNetwork: A network example with graphNEL class
NetSAM: Network Seriation and Modularization
NetSAM-package: Network Seriation and Modularization

Functions

NetSAM Man page Source code
NetSAM-package Man page
inputNetwork Man page
onLoad Source code

Files

DESCRIPTION
NAMESPACE
R
R/NetSAM.R
R/zzz.R
build
build/vignette.rds
data
data/inputNetwork.rda
inst
inst/doc
inst/doc/NetSAM.R
inst/doc/NetSAM.Rnw
inst/doc/NetSAM.pdf
inst/extdata
inst/extdata/exampleNetwork.txt
inst/unitTests
inst/unitTests/test_NetSAM.R
man
man/NetSAM-package.Rd
man/NetSAM.Rd
man/inputNetwork.Rd
tests
tests/runTests.R
vignettes
vignettes/NetSAM.Rnw
vignettes/underscore.sty
NetSAM documentation built on May 20, 2017, 9:19 p.m.