NetSAM: Network Seriation And Modularization

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("NetSAM")
AuthorJing Wang <jing.wang.2@vanderbilt.edu>
Bioconductor views Network Visualization
Date of publicationNone
MaintainerBing Zhang <bing.zhang@vanderbilt.edu>
LicenseLGPL
Version1.14.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/NetSAM.R R/zzz.R
build
build/vignette.rds
data
data/inputNetwork.rda
inst
inst/doc
inst/doc/NetSAM.R
inst/doc/NetSAM.Rnw
inst/doc/NetSAM.pdf
inst/extdata
inst/extdata/exampleNetwork.txt
inst/unitTests
inst/unitTests/test_NetSAM.R
man
man/NetSAM-package.Rd man/NetSAM.Rd man/inputNetwork.Rd
tests
tests/runTests.R
vignettes
vignettes/NetSAM.Rnw
vignettes/underscore.sty

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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