API for NewWave
Negative binomial model for scRNA-seq
| Global functions | |
|---|---|
| .is_wholenumber | Source code |
| delayed_calc | Source code |
| delayed_initialization | Man page Source code |
| delayed_optimization | Man page Source code |
| initialization | Man page Source code |
| ll_calc | Source code |
| nb.loglik | Source code |
| nb.loglik.dispersion | Source code |
| nb.loglik.matrix | Man page Source code |
| newAIC | Man page |
| newAIC,newmodel,matrix-method | Man page |
| newAlpha | Man page |
| newAlpha,newmodel-method | Man page |
| newBIC | Man page |
| newBIC,newmodel,matrix-method | Man page |
| newBeta | Man page |
| newBeta,newmodel-method | Man page |
| newEpsilon_W | Man page |
| newEpsilon_W,newmodel-method | Man page |
| newEpsilon_alpha | Man page |
| newEpsilon_alpha,newmodel-method | Man page |
| newEpsilon_beta | Man page |
| newEpsilon_beta,newmodel-method | Man page |
| newEpsilon_gamma | Man page |
| newEpsilon_gamma,newmodel-method | Man page |
| newEpsilon_zeta | Man page |
| newEpsilon_zeta,newmodel-method | Man page |
| newFit | Man page |
| newFit,DelayedMatrix-method | Man page |
| newFit,SummarizedExperiment-method | Man page |
| newFit,dgCMatrix-method | Man page |
| newFit,matrix-method | Man page |
| newGamma | Man page |
| newGamma,newmodel-method | Man page |
| newLogMu | Man page |
| newLogMu,newmodel-method | Man page |
| newMu | Man page |
| newMu,newmodel-method | Man page |
| newPhi | Man page |
| newPhi,newmodel-method | Man page |
| newSim | Man page |
| newSim,newmodel-method | Man page |
| newTheta | Man page |
| newTheta,newmodel-method | Man page |
| newV | Man page |
| newV,newmodel-method | Man page |
| newW | Man page |
| newW,newmodel-method | Man page |
| newWave | Man page |
| newWave,SummarizedExperiment-method | Man page |
| newX | Man page |
| newX,newmodel-method | Man page |
| newZeta | Man page |
| newZeta,newmodel-method | Man page |
| newloglik | Man page |
| newloglik,newmodel,matrix-method | Man page |
| newmodel | Man page Source code |
| newmodel-class | Man page |
| newpenalty | Man page |
| newpenalty,newmodel-method | Man page |
| numberFactors | Man page |
| numberFactors,newmodel-method | Man page |
| numberFeatures | Man page |
| numberFeatures,newmodel-method | Man page |
| numberParams | Man page |
| numberParams,newmodel-method | Man page |
| numberSamples | Man page |
| numberSamples,newmodel-method | Man page |
| optimd | Source code |
| optimization | Man page Source code |
| orthogonalizeTraceNorm | Source code |
| setup | Man page Source code |
| show,newmodel-method | Man page |
