OLINgui: Graphical user interface for OLIN package
In OLINgui: Graphical user interface for OLIN
Description
Usage
Details
Value
Note
Author(s)
References
See Also
Description
The function OLINgui provides a graphical user interface for
visualisation, normalisation and quality testing of two-channel microarray data.
It is based on the functions of the OLIN package.
Usage
1
OLINgui()
Details
The function OLINgui launches a graphical user interface for the OLIN package.
It is based on Tk widgets using the R TclTk interface by Peter Dalgaard. It also employs
some pre-made widgets from the tkWidgets Bioconductor-package by Jianhua Zhang for
the selection of objects/files to be loaded.
OLINgui provides a convient interface to most functionalities of the OLIN package without restriction
of options. An exception is the visualisaton, where default arguments for plotting
are used. To fine-tune plots, the underlying plotting functions in the OLIN package
can be applied.
The usage of OLINgui assumes existing marray objects for the batch of arrays to
be analysed and normalised. To construct marray objects using a graphical interface, refer to read.marrayRaw.
Some underlying functions (e.g.mxy2.plot and optinally olin)
) require an additonal list of X- and Y-coordinates of spots.
This has to be done “by hand” yet. However, most functions do not need this list.
For a overview of the functionality of OLINgui, please refer to the package documentation.
Value
OLINgui returns a tclObj object.
Note
The newest versions of OLINgui can be found at the OLIN webpage
(http://itb.biologie.hu-berlin.de/~futschik/software/R/OLIN).
Author(s)
Matthias E. Futschik
(http://itb.biologie.hu-berlin.de/~futschik)
References
M.Futschik and T.Crompton (2004) Model selection and efficiency testing for normalization of cDNA microarray data,
Genome Biology, 5:R60
M.Futschik and T.Crompton (2005), Optimized
normalization, visualization and quality testing for two-channel
microarray data, Bioinformatics, 21(8):1724-6
OLIN web-page: http://itb.biologie.hu-berlin.de/~futschik/software/R/OLIN
See Also
OLINgui documentation built on Nov. 8, 2020, 8:16 p.m.
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Description Usage Details Value Note Author(s) References See Also
Description
The function OLINgui provides a graphical user interface for
visualisation, normalisation and quality testing of two-channel microarray data.
It is based on the functions of the OLIN package.
Usage
1 | OLINgui()
|
Details
The function OLINgui launches a graphical user interface for the OLIN package.
It is based on Tk widgets using the R TclTk interface by Peter Dalgaard. It also employs
some pre-made widgets from the tkWidgets Bioconductor-package by Jianhua Zhang for
the selection of objects/files to be loaded.
OLINgui provides a convient interface to most functionalities of the OLIN package without restriction of options. An exception is the visualisaton, where default arguments for plotting are used. To fine-tune plots, the underlying plotting functions in the OLIN package can be applied.
The usage of OLINgui assumes existing marray objects for the batch of arrays to
be analysed and normalised. To construct marray objects using a graphical interface, refer to read.marrayRaw.
Some underlying functions (e.g.mxy2.plot and optinally olin)
) require an additonal list of X- and Y-coordinates of spots.
This has to be done “by hand” yet. However, most functions do not need this list.
For a overview of the functionality of OLINgui, please refer to the package documentation.
Value
OLINgui returns a tclObj object.
Note
The newest versions of OLINgui can be found at the OLIN webpage
(http://itb.biologie.hu-berlin.de/~futschik/software/R/OLIN).
Author(s)
Matthias E. Futschik (http://itb.biologie.hu-berlin.de/~futschik)
References
M.Futschik and T.Crompton (2004) Model selection and efficiency testing for normalization of cDNA microarray data, Genome Biology, 5:R60
M.Futschik and T.Crompton (2005), Optimized normalization, visualization and quality testing for two-channel microarray data, Bioinformatics, 21(8):1724-6
OLIN web-page: http://itb.biologie.hu-berlin.de/~futschik/software/R/OLIN
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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