PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Version 1.18.0

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

AuthorAdi Laurentiu Tarca <atarca@med.wayne.edu>; Zhonghui Xu <zhonghui.xu@gmail.com>
Bioconductor views Microarray OneChannel TwoChannel
Date of publicationNone
MaintainerAdi Laurentiu Tarca <atarca@med.wayne.edu>
LicenseGPL (>= 2)
Version1.18.0
URL
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PADOG")

Popular man pages

compPADOG: Benchmark for gene set analysis methods using 24 datasets
filteranot: Remove duplicate probesets/probes from an gene expression...
padog: Pathway Analysis with Down-weighting of Overlapping Genes...
See all...

All man pages Function index File listing

Man pages

compPADOG: Benchmark for gene set analysis methods using 24 datasets
filteranot: Remove duplicate probesets/probes from an gene expression...
padog: Pathway Analysis with Down-weighting of Overlapping Genes...

Functions

compPADOG Man page Source code
filteranot Man page Source code
padog Man page Source code

Files

COPYING
DESCRIPTION
NAMESPACE
R
R/compPADOG.R
R/filteranot.R
R/padog.R
build
build/vignette.rds
inst
inst/doc
inst/doc/PADOG.R
inst/doc/PADOG.Rnw
inst/doc/PADOG.pdf
man
man/compPADOG.rd
man/filteranot.Rd
man/padog.Rd
vignettes
vignettes/PADOG.Rnw
vignettes/PADOG.bib
vignettes/Thumbs.db
PADOG documentation built on May 20, 2017, 10:10 p.m.

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