PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

AuthorAdi Laurentiu Tarca <atarca@med.wayne.edu>; Zhonghui Xu <zhonghui.xu@gmail.com>
Date of publicationNone
MaintainerAdi Laurentiu Tarca <atarca@med.wayne.edu>
LicenseGPL (>= 2)
Version1.16.0

View on Bioconductor

Files in this package

PADOG/COPYING
PADOG/DESCRIPTION
PADOG/NAMESPACE
PADOG/R
PADOG/R/compPADOG.R PADOG/R/filteranot.R PADOG/R/padog.R
PADOG/build
PADOG/build/vignette.rds
PADOG/inst
PADOG/inst/doc
PADOG/inst/doc/PADOG.R
PADOG/inst/doc/PADOG.Rnw
PADOG/inst/doc/PADOG.pdf
PADOG/man
PADOG/man/compPADOG.rd
PADOG/man/filteranot.Rd PADOG/man/padog.Rd
PADOG/vignettes
PADOG/vignettes/PADOG.Rnw
PADOG/vignettes/PADOG.bib
PADOG/vignettes/Thumbs.db

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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