PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

Getting started

Package details

AuthorAdi Laurentiu Tarca <[email protected]>; Zhonghui Xu <[email protected]>
Bioconductor views Microarray OneChannel TwoChannel
MaintainerAdi Laurentiu Tarca <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

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PADOG documentation built on Nov. 1, 2018, 4:21 a.m.