PECA: Probe-level Expression Change Averaging

Calculates Probe-level Expression Change Averages (PECA) to identify differential expression in Affymetrix gene expression microarray studies or in proteomic studies using peptide-level mesurements respectively.

Author
Tomi Suomi, Jukka Hiissa, Laura L. Elo
Date of publication
None
Maintainer
Tomi Suomi <tomi.suomi@utu.fi>
License
GPL (>= 2)
Version
1.10.0

View on Bioconductor

Man pages

PECA
PECA differential gene expression
PECASI
PECA splicing index

Files in this package

PECA/DESCRIPTION
PECA/NAMESPACE
PECA/R
PECA/R/PECA.R
PECA/R/PECASI.R
PECA/R/calculateSI.R
PECA/R/filterROTS.R
PECA/R/flattenCellIndices.R
PECA/R/psim.R
PECA/R/tukey.R
PECA/build
PECA/build/vignette.rds
PECA/inst
PECA/inst/NEWS
PECA/inst/doc
PECA/inst/doc/PECA.R
PECA/inst/doc/PECA.Rnw
PECA/inst/doc/PECA.pdf
PECA/inst/extdata
PECA/inst/extdata/peptides.tsv
PECA/man
PECA/man/PECA.Rd
PECA/man/PECASI.Rd
PECA/vignettes
PECA/vignettes/PECA.Rnw
PECA/vignettes/diagram_peca.pdf