PING: Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

AuthorXuekui Zhang <xuezhang@jhsph.edu>, Raphael Gottardo <raph@stat.ubc.ca>, Sangsoon Woo <swoo@fhcrc.org>
Date of publicationNone
MaintainerRenan Sauteraud <rsautera@fhcrc.org>
LicenseArtistic-2.0
Version2.18.0

View on Bioconductor

Files in this package

PING/DESCRIPTION
PING/NAMESPACE
PING/R
PING/R/PING.R PING/R/postPING.R PING/R/segmentPING.R PING/R/setClasses.R PING/R/setMethods.R
PING/aclocal.m4
PING/build
PING/build/vignette.rds
PING/cleanup
PING/configure
PING/configure.ac
PING/inst
PING/inst/CITATION
PING/inst/NEWS
PING/inst/doc
PING/inst/doc/PING-PE.R
PING/inst/doc/PING-PE.Rnw
PING/inst/doc/PING-PE.pdf
PING/inst/doc/PING.R
PING/inst/doc/PING.Rnw
PING/inst/doc/PING.pdf
PING/inst/extdata
PING/inst/extdata/GSM351492_R4_chr1.bed
PING/inst/extdata/yeastChrI.bam
PING/man
PING/man/CoverageTrack.Rd PING/man/NucleosomeTrack.Rd PING/man/PICS_IMPORT.Rd PING/man/PING.Rd PING/man/RawReadsTrack.Rd PING/man/ping-class.Rd PING/man/pingError-class.Rd PING/man/pingList-class.Rd PING/man/plotSummary.Rd PING/man/postPING.Rd PING/man/segmentPING.Rd PING/man/show.Rd PING/man/summary.Rd
PING/src
PING/src/Makevars.in
PING/src/Makevars.win
PING/src/init.c
PING/src/ping.c
PING/src/ping.h
PING/vignettes
PING/vignettes/GPL.txt
PING/vignettes/PING-PE.Rnw
PING/vignettes/PING.Rnw

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