PROMISE: PRojection Onto the Most Interesting Statistical Evidence

A general tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables as described in Pounds et. al. (2009) Bioinformatics 25: 2013-2019

Author
Stan Pounds <stanley.pounds@stjude.org>, Xueyuan Cao <xueyuan.cao@stjude.org>
Date of publication
None
Maintainer
Stan Pounds <stanley.pounds@stjude.org>, Xueyuan Cao <xueyuan.cao@stjude.org>
License
GPL (>= 2)
Version
1.26.0

View on Bioconductor

Man pages

avg.abs.genestat
Function to Compute Gene Set Statistics
jung.rstat
Function to Compute Jung's Statistics
phPatt
Phenotype Pattern Definition Set
PROMISE
PRojection onto the Most Interesting Statistical Evidence
promise.genestat
Function to Calculate PROMISE Statistics
PROMISE-package
PRojection Onto the Most Interesting Statistical Evidence
promise.pattern
PROMISE pattern
sampExprSet
An Example Expression Set
sampGeneSet
An Example Gene Set Collection
spearman.rstat
Function to Calculate Spearman Correlation Statistics

Files in this package

PROMISE/DESCRIPTION
PROMISE/NAMESPACE
PROMISE/R
PROMISE/R/PROMISE.R
PROMISE/R/avg.abs.genestat.R
PROMISE/R/jung.rstat.R
PROMISE/R/promise.genestat.R
PROMISE/R/spearman.rstat.R
PROMISE/build
PROMISE/build/vignette.rds
PROMISE/data
PROMISE/data/phPatt.rda
PROMISE/data/sampExprSet.rda
PROMISE/data/sampGeneSet.rda
PROMISE/inst
PROMISE/inst/doc
PROMISE/inst/doc/PROMISE.R
PROMISE/inst/doc/PROMISE.Rnw
PROMISE/inst/doc/PROMISE.pdf
PROMISE/man
PROMISE/man/PROMISE-package.Rd
PROMISE/man/PROMISE.Rd
PROMISE/man/avg.abs.genestat.Rd
PROMISE/man/jung.rstat.Rd
PROMISE/man/phPatt.Rd
PROMISE/man/promise.genestat.Rd
PROMISE/man/promise.pattern.Rd
PROMISE/man/sampExprSet.Rd
PROMISE/man/sampGeneSet.Rd
PROMISE/man/spearman.rstat.Rd
PROMISE/vignettes
PROMISE/vignettes/PROMISE.Rnw