PROMISE: PRojection Onto the Most Interesting Statistical Evidence
Version 1.28.0

A general tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables as described in Pounds et. al. (2009) Bioinformatics 25: 2013-2019

Browse man pages Browse package API and functions Browse package files

AuthorStan Pounds <stanley.pounds@stjude.org>, Xueyuan Cao <xueyuan.cao@stjude.org>
Bioconductor views GeneExpression Microarray MultipleComparison OneChannel
Date of publicationNone
MaintainerStan Pounds <stanley.pounds@stjude.org>, Xueyuan Cao <xueyuan.cao@stjude.org>
LicenseGPL (>= 2)
Version1.28.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PROMISE")

Man pages

avg.abs.genestat: Function to Compute Gene Set Statistics
jung.rstat: Function to Compute Jung's Statistics
phPatt: Phenotype Pattern Definition Set
PROMISE: PRojection onto the Most Interesting Statistical Evidence
promise.genestat: Function to Calculate PROMISE Statistics
PROMISE-package: PRojection Onto the Most Interesting Statistical Evidence
promise.pattern: PROMISE pattern
sampExprSet: An Example Expression Set
sampGeneSet: An Example Gene Set Collection
spearman.rstat: Function to Calculate Spearman Correlation Statistics

Functions

PROMISE Man page
PROMISE-package Man page
avg.abs.genestat Man page
jung.rstat Man page
phPatt Man page
promise.genestat Man page
promise.pattern Man page
sampExprSet Man page
sampGeneSet Man page
spearman.rstat Man page

Files

DESCRIPTION
NAMESPACE
R
R/PROMISE.R
R/avg.abs.genestat.R
R/jung.rstat.R
R/promise.genestat.R
R/spearman.rstat.R
build
build/vignette.rds
data
data/phPatt.rda
data/sampExprSet.rda
data/sampGeneSet.rda
inst
inst/doc
inst/doc/PROMISE.R
inst/doc/PROMISE.Rnw
inst/doc/PROMISE.pdf
man
man/PROMISE-package.Rd
man/PROMISE.Rd
man/avg.abs.genestat.Rd
man/jung.rstat.Rd
man/phPatt.Rd
man/promise.genestat.Rd
man/promise.pattern.Rd
man/sampExprSet.Rd
man/sampGeneSet.Rd
man/spearman.rstat.Rd
vignettes
vignettes/PROMISE.Rnw
PROMISE documentation built on May 20, 2017, 10:48 p.m.