PROcess: Ciphergen SELDI-TOF Processing
Version 1.52.0

A package for processing protein mass spectrometry data.

AuthorXiaochun Li
Bioconductor views MassSpectrometry Proteomics
Date of publicationNone
MaintainerXiaochun Li <xiaochun@jimmy.harvard.edu>
LicenseArtistic-2.0
Version1.52.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PROcess")

Popular man pages

align: Align peaks for a specified precision.
avesd: Compute the Average Standard Deviation for a Set of Spectra...
binning: Binning the Mass Spectrometry Data
getMzs: Extract M/Z values from the biomarker dataframe.
getPeaks: Peak Detection
intg: Integration
lnn: Estimate Signal and Variation of a Spectrum
See all...

All man pages Function index File listing

Man pages

align: Align peaks for a specified precision.
avesd: Compute the Average Standard Deviation for a Set of Spectra...
aveSpec: Compute mean spectrum of a set of spectra
binning: Binning the Mass Spectrometry Data
bslnoff: Baseline Substraction
gelmap: Plot the image of a set of spectra
getMzs: Extract M/Z values from the biomarker dataframe.
getPeaks: Peak Detection
getPeaks2: Quantify peaks for individual spectra.
intg: Integration
is.multiple: Find multiple-charged polypeptides.
isPeak: Locate Peaks in a Spectrum
lnn: Estimate Signal and Variation of a Spectrum
peaks: Peak Detection
pk2bmkr: Find Biomarkers.
quality: Quality Check on a Set of Spectra
read.files: Read a Spectrum from a Comma Deliminated File
renorm: Renormalize Spectra
rmBaseline: Batch Baseline Subtraction.
specZoom: Plotting a Spectrum with Peaks

Functions

align Man page Source code
aveSpec Man page Source code
avesd Man page Source code
binning Man page Source code
bslnoff Man page
gelmap Man page Source code
getMzs Man page Source code
getPeaks Man page Source code
getPeaks2 Man page Source code
intg Man page
is.multiple Man page Source code
isPeak Man page Source code
lnn Man page Source code
mymad Source code
noise Man page Source code
peaks Man page
pk2bmkr Man page Source code
quality Man page Source code
read.files Man page Source code
renorm Man page Source code
rmBaseline Man page Source code
sigma Man page Source code
specZoom Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/align.R
R/aveSpec.R
R/avesd.R
R/binning.R
R/bslnoff.R
R/gelmap.R
R/getMzs.R
R/getPeaks.R
R/getPeaks2.R
R/intg.R
R/is.multiple.R
R/isPeak.R
R/lnn.R
R/mymad.R
R/noise.R
R/peaks.R
R/pk2bmkr.R
R/quality.R
R/read.files.R
R/renorm.R
R/rmBaseline.R
R/segbg.R
R/sigma.R
R/specZoom.R
R/trnc.R
build
build/vignette.rds
inst
inst/Test
inst/Test/122402imac40-s-c-192combined_i11.csv
inst/Test/122402imac40-s-c-192combined_i12.csv
inst/calibration
inst/calibration/060503peptidecalib_1_128.csv
inst/calibration/060503peptidecalib_1_16.csv
inst/calibration/060503peptidecalib_1_2.csv
inst/calibration/060503peptidecalib_1_256.csv
inst/calibration/060503peptidecalib_1_32.csv
inst/calibration/060503peptidecalib_1_4.csv
inst/calibration/060503peptidecalib_1_64.csv
inst/calibration/060503peptidecalib_1_8.csv
inst/doc
inst/doc/howtoprocess.R
inst/doc/howtoprocess.Rnw
inst/doc/howtoprocess.pdf
man
man/align.Rd
man/aveSpec.Rd
man/avesd.Rd
man/binning.Rd
man/bslnoff.Rd
man/gelmap.Rd
man/getMzs.Rd
man/getPeaks.Rd
man/getPeaks2.Rd
man/intg.Rd
man/is.multiple.Rd
man/isPeak.Rd
man/lnn.Rd
man/peaks.Rd
man/pk2bmkr.Rd
man/quality.Rd
man/read.files.Rd
man/renorm.Rd
man/rmBaseline.Rd
man/specZoom.Rd
vignettes
vignettes/howtoprocess.Rnw
vignettes/howtoprocess.bib
PROcess documentation built on May 20, 2017, 10:24 p.m.

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