Polyfit: Add-on to DESeq to improve p-values and q-values

Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.

AuthorConrad Burden
Date of publicationNone
MaintainerConrad Burden <conrad.burden@anu.edu.au>
LicenseGPL (>= 3)
Version1.8.0

View on Bioconductor

Files in this package

Polyfit/DESCRIPTION
Polyfit/NAMESPACE
Polyfit/R
Polyfit/R/PolyfitFunctions.R
Polyfit/README.md
Polyfit/build
Polyfit/build/vignette.rds
Polyfit/inst
Polyfit/inst/doc
Polyfit/inst/doc/polyfit.R
Polyfit/inst/doc/polyfit.Rnw
Polyfit/inst/doc/polyfit.pdf
Polyfit/man
Polyfit/man/Polyfit-package.Rd Polyfit/man/levelPValues.Rd Polyfit/man/pfNbinomTest.Rd Polyfit/man/twoSidedPValueFromDiscrete.Rd
Polyfit/vignettes
Polyfit/vignettes/polyfit.Rnw
Polyfit/vignettes/polyfitFig1.pdf
Polyfit/vignettes/polyfitFig4.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.