ProteomicsAnnotationHubData: Transform public proteomics data resources into Bioconductor Data Structures

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ProteomicsAnnotationHubData")
AuthorGatto Laurent [aut, cre], Sonali Arora [aut]
Bioconductor views DataImport Proteomics
Date of publicationNone
MaintainerLaurent Gatto <lg390@cam.ac.uk>
LicenseArtistic-2.0
Version1.6.0
https://github.com/lgatto/ProteomicsAnnotationHubData

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/PAHD.R R/ProteomicsAnnotationHubData.R R/utils.R R/zzz.R
README.md
build
build/vignette.rds
inst
inst/doc
inst/doc/ProteomicsAnnotationHubData.R
inst/doc/ProteomicsAnnotationHubData.Rmd
inst/doc/ProteomicsAnnotationHubData.html
inst/extdata
inst/extdata/PXD000001.dcf
inst/extdata/PXD000001Fasta.rda
inst/extdata/PXD000001MSnSet.rda
inst/extdata/PXD000001MzID.rda
inst/extdata/PXD000001MzML.rda
inst/scripts
inst/scripts/PXD000001.R
inst/scripts/README
man
man/PAHD-class.Rd man/PAHD.Rd man/ProteomicsAnnotationHubData.Rd man/identicalRemLoc.Rd man/makeAnnotationHubMetadata.Rd man/readPahdFiles.Rd man/writePahdTemplate.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/test_PXD000001.R
vignettes
vignettes/ProteomicsAnnotationHubData.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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