ProteomicsAnnotationHubData: Transform public proteomics data resources into Bioconductor Data Structures

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These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Author
Gatto Laurent [aut, cre], Sonali Arora [aut]
Date of publication
None
Maintainer
Laurent Gatto <lg390@cam.ac.uk>
License
Artistic-2.0
Version
1.4.0
URLs

View on Bioconductor

Man pages

identicalRemLoc
Are the remote and local instances identical
makeAnnotationHubMetadata
Make an AnnotationHubMeta resource
PAHD
Prepare data for inclusion into AnnotationHub
PAHD-class
An S4 class for ProteomicsAnnotationHubData objects
ProteomicsAnnotationHubData
Get started with ProteomicsAnnotationHubData
readPahdFiles
Reads one or multiple PAHD template files
writePahdTemplate
Write a ProteomicsAnnotationHubData template

Files in this package

ProteomicsAnnotationHubData/DESCRIPTION
ProteomicsAnnotationHubData/NAMESPACE
ProteomicsAnnotationHubData/NEWS
ProteomicsAnnotationHubData/R
ProteomicsAnnotationHubData/R/PAHD.R
ProteomicsAnnotationHubData/R/ProteomicsAnnotationHubData.R
ProteomicsAnnotationHubData/R/utils.R
ProteomicsAnnotationHubData/R/zzz.R
ProteomicsAnnotationHubData/README.md
ProteomicsAnnotationHubData/build
ProteomicsAnnotationHubData/build/vignette.rds
ProteomicsAnnotationHubData/inst
ProteomicsAnnotationHubData/inst/doc
ProteomicsAnnotationHubData/inst/doc/ProteomicsAnnotationHubData.R
ProteomicsAnnotationHubData/inst/doc/ProteomicsAnnotationHubData.Rmd
ProteomicsAnnotationHubData/inst/doc/ProteomicsAnnotationHubData.html
ProteomicsAnnotationHubData/inst/extdata
ProteomicsAnnotationHubData/inst/extdata/PXD000001.dcf
ProteomicsAnnotationHubData/inst/extdata/PXD000001Fasta.rda
ProteomicsAnnotationHubData/inst/extdata/PXD000001MSnSet.rda
ProteomicsAnnotationHubData/inst/extdata/PXD000001MzID.rda
ProteomicsAnnotationHubData/inst/extdata/PXD000001MzML.rda
ProteomicsAnnotationHubData/inst/scripts
ProteomicsAnnotationHubData/inst/scripts/PXD000001.R
ProteomicsAnnotationHubData/inst/scripts/README
ProteomicsAnnotationHubData/man
ProteomicsAnnotationHubData/man/PAHD-class.Rd
ProteomicsAnnotationHubData/man/PAHD.Rd
ProteomicsAnnotationHubData/man/ProteomicsAnnotationHubData.Rd
ProteomicsAnnotationHubData/man/identicalRemLoc.Rd
ProteomicsAnnotationHubData/man/makeAnnotationHubMetadata.Rd
ProteomicsAnnotationHubData/man/readPahdFiles.Rd
ProteomicsAnnotationHubData/man/writePahdTemplate.Rd
ProteomicsAnnotationHubData/tests
ProteomicsAnnotationHubData/tests/testthat
ProteomicsAnnotationHubData/tests/testthat.R
ProteomicsAnnotationHubData/tests/testthat/test_PXD000001.R
ProteomicsAnnotationHubData/vignettes
ProteomicsAnnotationHubData/vignettes/ProteomicsAnnotationHubData.Rmd