Man pages for RCyjs
Display and manipulate graphs in cytoscape.js
| addGraph | addGraph |
| addGraphFromFile | addGraphFromFile |
| clearSelection | clearSelection |
| createTestGaph | createTestGraph |
| dataFramesToJSON | Create a cytoscape.js JSON graph from one or two data.frames. |
| deleteGraph | deleteGraph |
| deleteSelectedNodes | deleteSelectedNodes |
| eda | eda |
| edaNames | edaNames |
| fit | fit |
| fitSelection | fitSelection |
| getEdgeCount | getEdgeCount |
| getJSON | getJSON |
| getLayoutStrategies | getLayoutStrategies |
| getNodeCount | getNodeCount |
| getNodes | getNodes |
| getPosition | getPosition |
| getSelectedNodes | getSelectedNodes |
| getSupportedEdgeDecoratorShapes | getSupportedEdgeDecoratorShapes |
| getSupportedNodeShapes | getSupportedNodeShapes |
| getZoom | getZoom |
| graphNELtoJSON.string | Convert R graphNEL object to cytoscape.js JSON. |
| hAlign | hAlign |
| hideAllEdges | hideAllEdges |
| hideEdges | hideEdges |
| hideNodes | hideNodes |
| hideSelectedNodes | hideSelectedNodes |
| invertNodeSelection | invertNodeSelection |
| layout | layout |
| layoutSelectionInGrid | layoutSelectionInGrid |
| layoutSelectionInGridInferAnchorm | layoutSelectionInGridInferAnchor |
| loadStyleFile | loadStyleFile |
| noa | noa |
| noaNames | noaNames |
| RCyjs-class | Create an RCyjs object |
| readAndStandardizeJSONNetworkFile | Read in a JSON network file, identify (or add) elements field... |
| readAndStandardizeJSONStyleFile | Read in a JSON file, extract the selector elements, return... |
| redraw | redraw |
| restoreLayout | restoreLayout |
| saveJPG | saveJPG |
| saveLayout | saveLayout |
| savePNG | savePNG |
| selectFirstNeighborsOfSelectedNodes | selectFirstNeighborsOfSelectedNodes |
| selectNodes | selectNodes |
| setBackgroundColor | setBackgroundColor |
| setDefaultEdgeColor | setDefaultEdgeColor |
| setDefaultEdgeLineColor | setDefaultEdgeLineColor |
| setDefaultEdgeLineStyle | setDefaultEdgeLineStyle |
| setDefaultEdgeSourceArrowColor | setDefaultEdgeSourceArrowColor |
| setDefaultEdgeSourceArrowShape | setDefaultEdgeSourceArrowShape |
| setDefaultEdgeTargetArrowColor | setDefaultEdgeTargetArrowColor |
| setDefaultEdgeTargetArrowShape | setDefaultEdgeTargetArrowShape |
| setDefaultEdgeWidth | setDefaultEdgeWidth |
| setDefaultNodeBorderColor | setDefaultNodeBorderColor |
| setDefaultNodeBorderWidth | setDefaultNodeBorderWidth |
| setDefaultNodeColor | setDefaultNodeColor |
| setDefaultNodeFontColor | setDefaultNodeFontColor |
| setDefaultNodeFontSize | setDefaultNodeFontSize |
| setDefaultNodeHeight | setDefaultNodeHeight |
| setDefaultNodeShape | setDefaultNodeShape |
| setDefaultNodeSize | setDefaultNodeSize |
| setDefaultNodeWidth | setDefaultNodeWidth |
| setDefaultStyle | setDefaultStyle |
| setEdgeAttributes | setEdgeAttributes |
| setEdgeStyle | setEdgeStyle |
| setGraph | setGraph |
| setNodeAttributes | setNodeAttributes |
| setNodeBorderColor | setNodeBorderColor |
| setNodeBorderWidth | setNodeBorderWidth |
| setNodeColor | setNodeColor |
| setNodeColorRule | setNodeColorRule |
| setNodeFontColor | setNodeFontColor |
| setNodeFontSize | setNodeFontSize |
| setNodeHeight | setNodeHeight |
| setNodeLabelAlignment | setNodelLabelAlignment |
| setNodeLabelRule | setNodeLabelRule |
| setNodeShape | setNodeShape |
| setNodeSize | setNodeSize |
| setNodeSizeRule | setNodeSizeRule |
| setNodeWidth | setNodeWidth |
| setPosition | setPosition |
| setZoom | setZoom |
| sfn | sfn |
| showAll | showAll |
| showEdges | showEdges |
| showNodes | showNodes |
| simpleDemoGraph | simpleDemoGraph |
| vAlign | vAlign |
