Alu.hg19.demo | Subset of Alu genomic location dataset (hg19) |
Alu.hg38.demo | Subset of Alu genomic location dataset (hg38) |
fetchRefSeqGene | Get RefSeq gene database |
fetchRMSK | Get RE database from RepeatMasker |
findRECpG | Find RE-CpG genomic location given RE ranges information |
getBackend | Get BiocParallel back-end |
getGM12878 | Get methylation data of HapMap LCL sample GM12878 profiled by... |
GRannot | Annotate genomic ranges data with gene region information. |
grooMethy | Groom methylation data to fix potential data issues |
initREMP | RE Annotation Database Initialization |
options | Set or get options for REMP package |
remp | Repetitive element methylation prediction |
REMParcel-class | REMParcel instances |
REMP-package | Repetitive Element Methylation Prediction |
REMProduct-class | REMProduct instances |
remprofile | Extract DNA methylation data profiled in RE |
rempTemplate | Prepare data template for REMP |
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