ROTS: Reproducibility-Optimized Test Statistic

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

AuthorFatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Date of publicationNone
MaintainerFatemeh Seyednasrollah <fatsey@utu.fi>
LicenseGPL (>= 2)
Version1.2.0

View on Bioconductor

Files in this package

ROTS/DESCRIPTION
ROTS/NAMESPACE
ROTS/NEWS
ROTS/R
ROTS/R/ROTS.R ROTS/R/RcppExports.R ROTS/R/biggerN.R ROTS/R/bootstrapSamples.R ROTS/R/calculateFDR.R ROTS/R/calculateOverlaps1.R ROTS/R/calculateOverlaps2.R ROTS/R/calculateP.R ROTS/R/permutatedSamples.R ROTS/R/plot.ROTS.R ROTS/R/print.ROTS.R ROTS/R/summary.ROTS.R ROTS/R/testStatistic.R
ROTS/build
ROTS/build/vignette.rds
ROTS/data
ROTS/data/affySpikeIn.RData
ROTS/data/upsSpikeIn.RData
ROTS/inst
ROTS/inst/doc
ROTS/inst/doc/ROTS.R
ROTS/inst/doc/ROTS.Rnw
ROTS/inst/doc/ROTS.pdf
ROTS/man
ROTS/man/ROTS.Rd ROTS/man/affySpikeIn.Rd ROTS/man/plot.ROTS.Rd ROTS/man/summary.ROTS.Rd ROTS/man/upsSpikeIn.Rd
ROTS/src
ROTS/src/NeedForSpeed1.cpp
ROTS/src/NeedForSpeed2.cpp
ROTS/src/RcppExports.cpp
ROTS/src/pvalue.cpp
ROTS/vignettes
ROTS/vignettes/ROTS.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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