ROTS: Reproducibility-Optimized Test Statistic

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ROTS")
AuthorFatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Bioconductor views DifferentialExpression GeneExpression Microarray Proteomics RNASeq Software
Date of publicationNone
MaintainerFatemeh Seyednasrollah <fatsey@utu.fi>
LicenseGPL (>= 2)
Version1.2.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/ROTS.R R/RcppExports.R R/biggerN.R R/bootstrapSamples.R R/calculateFDR.R R/calculateOverlaps1.R R/calculateOverlaps2.R R/calculateP.R R/permutatedSamples.R R/plot.ROTS.R R/print.ROTS.R R/summary.ROTS.R R/testStatistic.R
build
build/vignette.rds
data
data/affySpikeIn.RData
data/upsSpikeIn.RData
inst
inst/doc
inst/doc/ROTS.R
inst/doc/ROTS.Rnw
inst/doc/ROTS.pdf
man
man/ROTS.Rd man/affySpikeIn.Rd man/plot.ROTS.Rd man/summary.ROTS.Rd man/upsSpikeIn.Rd
src
src/NeedForSpeed1.cpp
src/NeedForSpeed2.cpp
src/RcppExports.cpp
src/pvalue.cpp
vignettes
vignettes/ROTS.Rnw

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