ROTS: Reproducibility-Optimized Test Statistic

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Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author
Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Date of publication
None
Maintainer
Fatemeh Seyednasrollah <fatsey@utu.fi>
License
GPL (>= 2)
Version
1.2.0

View on Bioconductor

Man pages

affySpikeIn
Gene expression data from the Affymetrix spike-in experiment
plot.ROTS
Plotting of a ROTS object
ROTS
Reproducibility-Optimized Test Statistic (ROTS)
summary.ROTS
Summary of a ROTS object
upsSpikeIn
Protein expression data from the CPTAC Technology Assessment...

Files in this package

ROTS/DESCRIPTION
ROTS/NAMESPACE
ROTS/NEWS
ROTS/R
ROTS/R/ROTS.R
ROTS/R/RcppExports.R
ROTS/R/biggerN.R
ROTS/R/bootstrapSamples.R
ROTS/R/calculateFDR.R
ROTS/R/calculateOverlaps1.R
ROTS/R/calculateOverlaps2.R
ROTS/R/calculateP.R
ROTS/R/permutatedSamples.R
ROTS/R/plot.ROTS.R
ROTS/R/print.ROTS.R
ROTS/R/summary.ROTS.R
ROTS/R/testStatistic.R
ROTS/build
ROTS/build/vignette.rds
ROTS/data
ROTS/data/affySpikeIn.RData
ROTS/data/upsSpikeIn.RData
ROTS/inst
ROTS/inst/doc
ROTS/inst/doc/ROTS.R
ROTS/inst/doc/ROTS.Rnw
ROTS/inst/doc/ROTS.pdf
ROTS/man
ROTS/man/ROTS.Rd
ROTS/man/affySpikeIn.Rd
ROTS/man/plot.ROTS.Rd
ROTS/man/summary.ROTS.Rd
ROTS/man/upsSpikeIn.Rd
ROTS/src
ROTS/src/NeedForSpeed1.cpp
ROTS/src/NeedForSpeed2.cpp
ROTS/src/RcppExports.cpp
ROTS/src/pvalue.cpp
ROTS/vignettes
ROTS/vignettes/ROTS.Rnw