HNP: RRHO comparison data sets.

In RRHO: Inference on agreement between ordered lists

Description

RRHO comparison data sets. See references for details.

Usage

data(lists)

Format

Three data frames: HNP, My and Sestan. Each is a data.frame with gene identifiers and sorting values so that they can be used as inputes to RRHOComparison.

References

Stein JL*, de la Torre-Ubieta L*, Tian Y, Parikshak NN, Hernandez IA, Marchetto MC, Baker DK, Lu D, Lowe JK, Wexler EM, Muotri AR, Gage FH, Kosik KS, Geschwind DH. "A quantitative framework to evaluate modeling of cortical development by neural stem cells." Manuscript in press at Neuron. (*) Authors contributed equally to this work.

Examples

data(lists)
str(HNP) ; str(Sestan); str(My)

Example output

Loading required package: grid
'data.frame':	15144 obs. of  2 variables:
 $ GeneIdentifier: int  346389 1 29974 54715 2 144568 53947 51146 404744 8086 ...
 $ RankingVal    : num  -1.014 0.421 1.112 9.922 -4.893 ...
'data.frame':	15144 obs. of  2 variables:
 $ GeneIdentifier: int  346389 1 29974 54715 2 144568 53947 51146 404744 8086 ...
 $ RankingVal    : num  -0.466 0.539 0.44 7.252 -0.158 ...
'data.frame':	15144 obs. of  2 variables:
 $ GeneIdentifier: int  346389 1 29974 54715 2 144568 53947 51146 404744 8086 ...
 $ RankingVal    : num  0.258 -1.108 -0.245 -0.956 -3.451 ...

RRHO documentation built on Nov. 8, 2020, 5:46 p.m.