bowtie2_version: Print version information of bowtie2-2.2.3

In Rbowtie2: An R Wrapper for Bowtie2 and AdapterRemoval

Description

Print version information of bowtie2-2.2.3

Usage

bowtie2_version()

Value

An invisible Integer of call status. The value is 0 when there is not any mistakes Otherwise the value is non-zero.

Author(s)

Zheng Wei

References

Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature methods, 9(4), 357-359.

Examples

cmdout<-bowtie2_version();cmdout

Example output

arguments 'show.output.on.console', 'minimized' and 'invisible' are for Windows only
sh: 1: /usr/lib/R/site-library/Rbowtie2/bowtie2-align-s: Permission denied
Warning message:
In system(call, intern = TRUE, show.output.on.console = TRUE) :
  running command ''/usr/lib/R/site-library/Rbowtie2/bowtie2-align-s' --version' had status 126
character(0)
attr(,"status")
[1] 126

Rbowtie2 documentation built on Nov. 8, 2020, 5:35 p.m.