Man pages for RedeR
Interactive visualization and manipulation of nested networks
| addEdgeBetweenContainers | Add edges between containers. |
| addEdges | Add edges to RedeR graphs. |
| addGraph | Add graphs to RedeR application. |
| addLegend | Add graph legends to RedeR application. |
| addNodes | Add nodes to RedeR graphs. |
| addSeries | Add series to RedeR application. |
| addSubgraph | Add subgraphs to RedeR application. |
| addSubgraph.list | Add a list of subgraphs to RedeR application. |
| att | Map and set edge and vertex attributes to RedeR application. |
| calld | Call RedeR app from R. |
| cea | Co-expression analysis. |
| deleteEdges | Remove edges from RedeR graphs. |
| deleteNodes | Remove nodes from RedeR graphs. |
| deleteSelectedEdges | Delete selected edges in RedeR graphs. |
| deleteSelectedNodes | Delete selected nodes in RedeR graphs. |
| deSelectEdges | Unmark selected edges. |
| deSelectGraph | Unmark selected graph objects. |
| deSelectNodes | Unmark selected nodes. |
| duplicateGraph | Duplicate graphs in RedeR application. |
| exitd | Exit RedeR R-to-Java interface. |
| getContainerComponets | Get container components. |
| getEdgeIDs | Get edge IDs. |
| getEdges | Get edges. |
| getGraph | Get RedeR graph. |
| getNodeIDs | Get node IDs. |
| getNodes | Get nodes. |
| getSourceEdgeIDs | Get source-edge IDs. |
| getTargetEdgeIDs | Get target-edge IDs. |
| gtoy.rm | Random graphs and modules. |
| isDynamicsActive | Inquires about RedeR current state. |
| mergeNodes | Merge nodes. |
| mergeOutEdges | Merge out-edges between connected containers and transfers... |
| nesthc | Nest hclust objects to containers. |
| nestNodes | Nest nodes to containers. |
| ping | Test RedeR R-to-Java interface. |
| RedeR.data | Pre-processed dataset for RedeR case study. |
| RedeR-package | RedeR: bridging the gap between network analysis and... |
| rederpost | This function implements an RPC protocol for RedeR. |
| RedPort | The constructor for the RedPort class. |
| RedPort-class | Class "RedPort" |
| relax | relax |
| resetd | Reset RedeR app. |
| selectAllEdges | Select all edges. |
| selectAllNodes | selectAllNodes |
| selectEdges | selectEdges |
| selectGraph | Select graph. |
| selectNodes | Select nodes. |
| setArrowDirection | Set arrow direction. |
| subg | Subgraph of a graph. |
| updateContainerSize | Update container size. |
| updateGraph | Update RedeR graphs. |
| version | Version |
