RnaSeqSampleSize: RnaSeqSampleSize
Version 1.8.0

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data

AuthorShilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr
Bioconductor views DifferentialExpression ExperimentalDesign GeneExpression RNASeq Sequencing
Date of publicationNone
MaintainerShilin Zhao <zhaoshilin@gmail.com>
LicenseGPL (>= 2)
Version1.8.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RnaSeqSampleSize")

Getting started

README.md

Popular man pages

est_count_dispersion: est_count_dispersion
est_power: est_power
est_power_curve: est_power_curve
est_power_distribution: est_power_distribution
optimize_parameter: optimize_parameter
plot_power_curve: plot_power_curve
sample_size_distribution: sample_size_distribution
See all...

All man pages Function index File listing

Man pages

convertIdOneToOne: convertId
est_count_dispersion: est_count_dispersion
est_power: est_power
est_power_curve: est_power_curve
est_power_distribution: est_power_distribution
optimize_parameter: optimize_parameter
plot_power_curve: plot_power_curve
sample_size: sample_size
sample_size_distribution: sample_size_distribution

Functions

convertIdOneToOne Man page Source code
cumsumBorder Source code
est_count_dispersion Man page Source code
est_power Man page Source code
est_power_curve Man page Source code
est_power_distribution Man page Source code
est_power_distribution_root Source code
est_power_distribution_sampleSize Source code
est_power_model Source code
est_power_root Source code
est_power_root_fdr Source code
generateA2FxR Source code
generateModel Source code
modelPower Source code
myDnbinomR Source code
nb_pvalue_store Source code
optimize_parameter Man page Source code
pCutoffMatrix Source code
plot_power_curve Man page Source code
sample_size Man page Source code
sample_size_distribution Man page Source code
selectDistribution Source code
selecteGeneByName Source code
selecteGeneByPathway Source code
uniroot.integer Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/RcppExports.R
R/convertIdOneToOne.R
R/curve.R
R/distribution.R
R/estP.R
R/estPower.R
R/model.R
R/optimize.R
R/sampleSize.R
R/uniroot.R
README.md
build
build/vignette.rds
inst
inst/doc
inst/doc/RnaSeqSampleSize.R
inst/doc/RnaSeqSampleSize.Rnw
inst/doc/RnaSeqSampleSize.pdf
man
man/convertIdOneToOne.Rd
man/est_count_dispersion.Rd
man/est_power.Rd
man/est_power_curve.Rd
man/est_power_distribution.Rd
man/optimize_parameter.Rd
man/plot_power_curve.Rd
man/sample_size.Rd
man/sample_size_distribution.Rd
src
src/RcppExports.cpp
src/RnaSeqSampleSize.c
src/bd0.c
src/cumsumBorder.cpp
src/dpq.h
src/nmath.h
src/stirlerr.c
vignettes
vignettes/RnaSeqSampleSize.Rnw
RnaSeqSampleSize documentation built on May 20, 2017, 10:50 p.m.

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