Rolexa: Statistical analysis of Solexa sequencing data

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Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author
Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef
Date of publication
None
Maintainer
Jacques Rougemont <jacques.rougemont@epfl.ch>
License
GPL-2
Version
1.27.0

View on Bioconductor

Man pages

AllClasses
Rolexa Setup Class
Batch
Multi-threaded Probabilistic Base Calling
Files
SaveResults
Model1
Correct for global correlations and biases
Model2
FilterResults
Model3
Fit and Plot intensities
Plots1
Batch Analysis
Plots2
Diagnostic plots
Plots3
Reconstruct tile image

Files in this package

Rolexa/DESCRIPTION
Rolexa/NAMESPACE
Rolexa/R
Rolexa/R/AllClasses.R
Rolexa/R/Batch.R
Rolexa/R/Files.R
Rolexa/R/Model.R
Rolexa/R/Plots.R
Rolexa/build
Rolexa/build/vignette.rds
Rolexa/inst
Rolexa/inst/doc
Rolexa/inst/doc/Rolexa-vignette-batchplot.R
Rolexa/inst/doc/Rolexa-vignette-tileimage.R
Rolexa/inst/doc/Rolexa-vignette.R
Rolexa/inst/doc/Rolexa-vignette.Rnw
Rolexa/inst/doc/Rolexa-vignette.pdf
Rolexa/man
Rolexa/man/AllClasses.Rd
Rolexa/man/Batch.Rd
Rolexa/man/Files.Rd
Rolexa/man/Model1.Rd
Rolexa/man/Model2.Rd
Rolexa/man/Model3.Rd
Rolexa/man/Plots1.Rd
Rolexa/man/Plots2.Rd
Rolexa/man/Plots3.Rd
Rolexa/vignettes
Rolexa/vignettes/Rolexa-vignette.Rnw
Rolexa/vignettes/Rolexa-vignette.bib