API for Rtpca
Thermal proximity co-aggregation with R

Global functions
.adaptComplexAnnoFromPPi	Source code
.checkAnnoArguments	Source code
.checkMatDims	Source code
.combineCondDistMatsFstat	Source code
.compareConditions	Source code
.compareConditionsRandom	Source code
.computeComplexRocTable	Source code
.computeDistPValue	Source code
.computeEmpiricalPValue	Source code
.computeTpcaResultTable	Source code
.createBackgroundDistList	Source code
.createComplexRocTable	Source code
.createDistMatTpcaObj	Source code
.createPPiRocTable	Source code
.distMat2AnnotatedPPiDf	Source code
.filterDistMat	Source code
.gatherSubMat	Source code
.getCommonRownames	Source code
.getDf4PlotProfiles	Source code
.getMatList	Source code
.getMeanDistVals4Complexes	Source code
.getMeanDistVals4RandComplexes	Source code
.getRandomProteinPairs	Source code
.getSummarizedMat	Source code
.intersectComplexAnnotation	Source code
.permuteComplexAnno	Source code
.sampleBackgroundDistribution	Source code
.setBackgroundDistribution	Source code
.simpleAuc	Source code
.testForComplexCoAggregation	Source code
.testForPPiCoAggregation	Source code
CommonFeatures	Man page
CommonFeatures,tpcaResult-method	Man page
ComplexAnnotation	Man page
ComplexAnnotation,tpcaResult-method	Man page
ComplexBackgroundDistributionList	Man page
ComplexBackgroundDistributionList,tpcaResult-method	Man page
ComplexRocTable	Man page
ComplexRocTable,tpcaResult-method	Man page
ContrastCondName	Man page
ContrastCondName,tpcaResult-method	Man page
ContrastDistMat	Man page
ContrastDistMat,tpcaResult-method	Man page
ContrastList	Man page
ContrastList,tpcaResult-method	Man page
CtrlCondName	Man page
CtrlCondName,tpcaResult-method	Man page
DistMat	Man page
DistMat,tpcaResult-method	Man page
DistMethod	Man page
DistMethod,tpcaResult-method	Man page
ObjList	Man page
ObjList,tpcaResult-method	Man page
PPiAnnotation	Man page
PPiAnnotation,tpcaResult-method	Man page
PPiRocTable	Man page
PPiRocTable,tpcaResult-method	Man page
PPiRocTableAnno	Man page
PPiRocTableAnno,tpcaResult-method	Man page
SetCommonFeatures	Man page
SetCommonFeatures,tpcaResult-method	Man page
SetComplexAnnotation	Man page
SetComplexAnnotation,tpcaResult-method	Man page
SetComplexBackgroundDistributionList	Man page
SetComplexBackgroundDistributionList,tpcaResult-method	Man page
SetComplexRocTable	Man page
SetComplexRocTable,tpcaResult-method	Man page
SetContrastCondName	Man page
SetContrastCondName,tpcaResult-method	Man page
SetContrastDistMat	Man page
SetContrastDistMat,tpcaResult-method	Man page
SetCtrlCondName	Man page
SetCtrlCondName,tpcaResult-method	Man page
SetDiffTpcaResultTable	Man page
SetDiffTpcaResultTable,tpcaResult-method	Man page
SetDistMat	Man page
SetDistMat,tpcaResult-method	Man page
SetDistMethod	Man page
SetDistMethod,tpcaResult-method	Man page
SetPPiRocTable	Man page
SetPPiRocTable,tpcaResult-method	Man page
SetPPiRocTableAnno	Man page
SetPPiRocTableAnno,tpcaResult-method	Man page
SetSummaryMethod	Man page
SetSummaryMethod,tpcaResult-method	Man page
SetTpcaResultTable	Man page
SetTpcaResultTable,tpcaResult-method	Man page
SummaryMethod	Man page
SummaryMethod,tpcaResult-method	Man page
createDistMat	Man page Source code
diffTpcaResultTable	Man page
diffTpcaResultTable,tpcaResult-method	Man page
ori_et_al_complex_ppis	Man page
ori_et_al_complexes_df	Man page
plotComplexRoc	Man page Source code
plotDiffTpcaVolcano	Man page Source code
plotPPiProfiles	Man page Source code
plotPPiRoc	Man page Source code
plotTpcaVolcano	Man page Source code
runDiffTPCA	Man page Source code
runTPCA	Man page Source code
string_ppi_df	Man page
tpcaResult	Man page
tpcaResult-class	Man page
tpcaResultTable	Man page
tpcaResultTable,tpcaResult-method	Man page