Files in Rtpca

Thermal proximity co-aggregation with R

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/ori_et_al_complex_ppis.rda

data/datalist

data/string_ppi_df.rda

data/ori_et_al_complexes_df.rda

R/tpcaResult-class.R R/data.R R/functions.R vignettes/Rtpca.Rmd

vignettes/cell.csl

vignettes/refs.bib

man/ComplexBackgroundDistributionList-tpcaResult-method.Rd man/ContrastCondName-tpcaResult-method.Rd man/plotPPiProfiles.Rd man/SetContrastCondName-tpcaResult-method.Rd man/plotPPiRoc.Rd man/ContrastList-tpcaResult-method.Rd man/plotDiffTpcaVolcano.Rd man/PPiRocTable-tpcaResult-method.Rd man/runDiffTPCA.Rd man/SetDistMat-tpcaResult-method.Rd man/SetPPiRocTable-tpcaResult-method.Rd man/CtrlCondName-tpcaResult-method.Rd man/SetTpcaResultTable-tpcaResult-method.Rd man/diffTpcaResultTable-tpcaResult-method.Rd man/tpcaResultTable-tpcaResult-method.Rd man/ObjList-tpcaResult-method.Rd man/DistMat-tpcaResult-method.Rd man/SummaryMethod-tpcaResult-method.Rd man/runTPCA.Rd man/tpcaResult-class.Rd man/DistMethod-tpcaResult-method.Rd man/SetComplexAnnotation-tpcaResult-method.Rd man/plotTpcaVolcano.Rd man/string_ppi_df.Rd man/PPiRocTableAnno-tpcaResult-method.Rd man/SetDistMethod-tpcaResult-method.Rd man/SetDiffTpcaResultTable-tpcaResult-method.Rd man/SetComplexBackgroundDistributionList-tpcaResult-method.Rd man/SetCommonFeatures-tpcaResult-method.Rd man/ComplexAnnotation-tpcaResult-method.Rd man/ori_et_al_complexes_df.Rd man/ori_et_al_complex_ppis.Rd man/SetComplexRocTable-tpcaResult-method.Rd man/CommonFeatures-tpcaResult-method.Rd man/PPiAnnotation-tpcaResult-method.Rd man/SetPPiRocTableAnno-tpcaResult-method.Rd man/SetContrastDistMat-tpcaResult-method.Rd man/SetSummaryMethod-tpcaResult-method.Rd man/plotComplexRoc.Rd man/createDistMat.Rd man/ContrastDistMat-tpcaResult-method.Rd man/SetCtrlCondName-tpcaResult-method.Rd man/ComplexRocTable-tpcaResult-method.Rd tests/testthat.R tests/testthat/test-combineCondDistMatsFstat.R tests/testthat/test-plotTpcaVolcano.R tests/testthat/test-tpcaResult-class-generic-ObjList.R tests/testthat/test-getCommonRownames.R tests/testthat/test-runDiffTPCA.R tests/testthat/test-intersectComplexAnnotation.R tests/testthat/test-plotPPiRoc.R tests/testthat/test-checkAnnoArguments.R tests/testthat/test-tpcaResult-class-generic-CommonFeatures.R tests/testthat/test-createDistMatTpcaObj.R tests/testthat/test-runTPCA.R tests/testthat/test-filterDistMat.R tests/testthat/test-getSummarizedMat.R tests/testthat/test-getMatList.R tests/testthat/test-plotDiffTpcaVolcano.R tests/testthat/test-createDistMat.R tests/testthat/test-createBackgroundDistList.R tests/testthat/test-checkMatDims.R tests/testthat/test-distMat2AnnotatedPPiDf.R tests/testthat/test-plotPPiProfiles.R tests/testthat/test-sampleBackgroundDistribution.R

inst/CITATION

inst/doc/Rtpca.Rmd

inst/doc/Rtpca.html

inst/doc/Rtpca.R

inst/figures/README-unnamed-chunk-13-1.png

inst/figures/README-unnamed-chunk-17-1.png

inst/figures/README-unnamed-chunk-12-1.png

inst/figures/README-unnamed-chunk-15-1.png

Rtpca documentation built on Nov. 8, 2020, 7:44 p.m.