ls_url: list files available at annotation/gencode url
In SCANVIS: SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions

Function called upon by SCANVISannotation for GTF file pulldown from url supplied

1	ls_url(url)

url

url to GTF files

calls upon functions in Rcurl and rtracklayer

a list of files for download at url

1	ftpfiles=ls_url('ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_19/')

SCANVIS documentation built on Nov. 8, 2020, 5:14 p.m.

SCANVIS index

Package overview README.md SCANVIS

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