Description Usage Arguments Details Value Author(s) Examples
Peak calling function
1 | peakcall(res, flank = 1, fdrcut = 1e-05)
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res |
Result matrix returned by SCATE |
flank |
Numeric variable of the number of flanking bins for each bin. For each bin, an averaged signal of itself and the flanking bins will be calculated and compared to a background distribution. |
fdrcut |
Numeric variable of FDR cutoff. Bins passing the FDR cutoff will be peaks. |
This function performs peak calling for signal generated by SCATE
A list with length equal to the number of clusters. Each element is a data frame with five columns: chromosome name, starting location, ending location, FDR and signal. The data frame is ordered by FDR then by signal.
Zhicheng Ji, Weiqiang Zhou, Wenpin Hou, Hongkai Ji* <whou10@jhu.edu>
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