SCBN: A novel normalization method and differential expression analysis of RNA-seq d between different species

This package provides a scale based normalization (SCBN) method to identify genes with differential expression between different species. It takes into account the available knowledge of conserved orthologous genes and the hypothesis testing framework to detect differentially expressed orthologous genes. The method on this package are described in the article 'A statistical normalization method and differential expression analysis for RNA-seq data between different species' by Yan Zhou, Jiadi Zhu, Tiejun Tong, Junhui Wang, Bingqing Lin, Jun Zhang (2018, pending publication).

Package details

AuthorYan Zhou
Bioconductor views DifferentialExpression GeneExpression Normalization
MaintainerYan Zhou <[email protected]>
LicenseGPL-2
Version1.0.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SCBN")

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SCBN documentation built on Nov. 1, 2018, 5:03 a.m.