meltSE: meltSE

In SEtools: SEtools: tools for working with SummarizedExperiment

Description

Melts a SE object into a ggplot-ready long data.frame.

Usage

meltSE(x, genes, assayName = NULL, colDat.columns = NULL, rowDat.columns = NA)

Arguments

x	An object of class SummarizedExperiment-class
genes	A vector of genes to include. Use 'genes=NULL' to include all.
assayName	The name(s) of the assay(s) to use. If NULL and the assays are named, all of them will be included (if they are not named, the first one will be used).
colDat.columns	The colData columns to include (defaults includes all). Use 'colDat.columns=NA' in order not to include any.
rowDat.columns	The rowData columns to include (none included by default). Use 'rowData=NULL' to include all.

Value

A data.frame.

Examples

data("SE", package="SEtools")
head(meltSE(SE,"Fos"))

SEtools documentation built on Nov. 8, 2020, 8:21 p.m.