exonCompatible: Compatible fragment counts for exons

In SGSeq: Splice event prediction and quantification from RNA-seq data

Description

Identify fragments compatible with exons.

Usage

exonCompatible(exons, spliceL, spliceR, frag_exonic, frag_intron,
  counts = TRUE)

Arguments

exons	IRanges of exons
spliceL	Logical vector indicating whether LHS boundary is spliced
spliceR	Logical vector indicating whether RHS boundary is spliced
frag_exonic	IRangesList of exonic regions, one entry per fragment
frag_intron	IRangesList of introns, one entry per fragment
counts	Logical indicating whether counts or indices of compatible fragments should be returned

Value

Counts or list of indices of compatible fragments

Author(s)

Leonard Goldstein

SGSeq documentation built on Nov. 8, 2020, 8:31 p.m.