SICtools-package: tools for SNV/Indel Comparison between two bam files with...
In SICtools: Find SNV/Indel differences between two bam files with near relationship
Description
This package is to find SNV/Indel differences between two bam files with near relationship
in a way of pairwise comparison thourgh each base position across the genome region of interest.
The difference is inferred by fisher test and euclidean distance, the input of which is the base
count (A,T,G,C) in a given position and read counts for indels that span no less than 2bp on both
sides of indel region called from samtools+bcftools
Details
Package: SICtools
Type: Package
Version: 1.0
Date: 2014-07-24
License: GPL (>=2)
LazyLoad: Yes
Author(s)
Xiaobin Xing
Maintainer: Xiaobin Xing <xxb0316@gmail.com>
SICtools documentation built on Nov. 8, 2020, 5:12 p.m.
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Description
This package is to find SNV/Indel differences between two bam files with near relationship in a way of pairwise comparison thourgh each base position across the genome region of interest. The difference is inferred by fisher test and euclidean distance, the input of which is the base count (A,T,G,C) in a given position and read counts for indels that span no less than 2bp on both sides of indel region called from samtools+bcftools
Details
| Package: | SICtools |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2014-07-24 |
| License: | GPL (>=2) |
| LazyLoad: | Yes |
Author(s)
Xiaobin Xing
Maintainer: Xiaobin Xing <xxb0316@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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