SICtools-package: tools for SNV/Indel Comparison between two bam files with...

Description Details Author(s)

Description

This package is to find SNV/Indel differences between two bam files with near relationship in a way of pairwise comparison thourgh each base position across the genome region of interest. The difference is inferred by fisher test and euclidean distance, the input of which is the base count (A,T,G,C) in a given position and read counts for indels that span no less than 2bp on both sides of indel region called from samtools+bcftools

Details

Package: SICtools
Type: Package
Version: 1.0
Date: 2014-07-24
License: GPL (>=2)
LazyLoad: Yes

Author(s)

Xiaobin Xing

Maintainer: Xiaobin Xing <[email protected]>


SICtools documentation built on Nov. 1, 2018, 3:38 a.m.