SRGnet: SRGnet: An R package for studying synergistic response to gene mutations from transcriptomics data from transcriptomics data
Version 1.2.0

We developed SRGnet to analyze synergistic regulatory mechanisms in transcriptome profiles that act to enhance the overall cell response to combination of mutations, drugs or environmental exposure. This package can be used to identify regulatory modules downstream of synergistic response genes, prioritize synergistic regulatory genes that may be potential intervention targets, and contextualize gene perturbation experiments.

AuthorIsar Nassiri [aut, cre], Matthew McCall [aut, cre]
Bioconductor views Regression Software StatisticalMethod
Date of publicationNone
MaintainerIsar Nassiri <isar_nassiri@urmc.rochester.edu>
LicenseGPL-2
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SRGnet")

Getting started

SRGnet An R package for studying synergistic response to gene mutations from transcriptomics data"

Popular man pages

Differentially_expressed_genes: List of differentially expressed genes in a murine colon...
PLCRG: List of synergistic response genes in a murine colon cancer...
SRGnet: Synergistic response to gene mutations specific network
Transcriptomics: Murine colon cancer transcriptomics profile under single and...
See all...

All man pages Function index File listing

Man pages

Differentially_expressed_genes: List of differentially expressed genes in a murine colon...
PLCRG: List of synergistic response genes in a murine colon cancer...
SRGnet: Synergistic response to gene mutations specific network
Transcriptomics: Murine colon cancer transcriptomics profile under single and...

Functions

Files

DESCRIPTION
NAMESPACE
R
R/Differentially_expressed_genes.R
R/PLCRG.R
R/SRGnet.R
R/Transcriptomics.R
build
build/vignette.rds
data
data/Differentially_expressed_genes.rda
data/PLCRG.rda
data/Transcriptomics.rda
inst
inst/doc
inst/doc/vignette.Rmd
inst/doc/vignette.html
man
man/Differentially_expressed_genes.Rd
man/PLCRG.Rd
man/SRGnet.Rd
man/Transcriptomics.Rd
vignettes
vignettes/vignette.Rmd
SRGnet documentation built on May 20, 2017, 9:34 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.