SRGnet: SRGnet An R package for studying synergistic response genes from transcriptomics data

We developed SRMnet to analyze synergistic regulatory mechanisms in transcriptome profiles that act to enhance the overall cell response to combination of mutations, drugs or environmental exposure. This package can be used to identify regulatory modules downstream of synergistic response genes, prioritize synergistic regulatory genes that may be potential intervention targets, and contextualize gene perturbation experiments.

AuthorIsar Nassiri [aut, cre], Matthew McCall [aut, cre]
Date of publicationNone
MaintainerIsar Nassiri <isar_nassiri@urmc.rochester.edu>
LicenseGPL-2
Version1.0.0

View on Bioconductor

Files in this package

SRGnet/DESCRIPTION
SRGnet/NAMESPACE
SRGnet/R
SRGnet/R/Differentially_expressed_genes.R SRGnet/R/PLCRG.R SRGnet/R/SRGnet_function.R SRGnet/R/Transcriptomics.R
SRGnet/build
SRGnet/build/vignette.rds
SRGnet/data
SRGnet/data/Differentially_expressed_genes.rda
SRGnet/data/PLCRG.rda
SRGnet/data/Transcriptomics.rda
SRGnet/inst
SRGnet/inst/doc
SRGnet/inst/doc/vignette.Rmd
SRGnet/inst/doc/vignette.html
SRGnet/man
SRGnet/man/Differentially_expressed_genes.Rd SRGnet/man/PLCRG.Rd SRGnet/man/SRG.Rd SRGnet/man/SRGnet.Rd SRGnet/man/Transcriptomics.Rd
SRGnet/vignettes
SRGnet/vignettes/vignette.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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