liverDataVP: Example 4C-seq data set of fetal liver data, with added VP
In Scale4C: Scale4C: an R/Bioconductor package for scale-space transformation of 4C-seq data
Description
Usage
Format
Value
Source
Examples
Description
This data set contains an instance of a Scale4C object.
The 4C-seq data was taken from Stadhouders et al's fetal liver data set.
It contains a manually added viewpoint peak and a peak with a manual
coordinate correction.
Usage
1
data("liverDataVP")
Format
Formal class 'Scale4C'
Value
A pre-computed instance of a Scale4C object with fingerprint
map and singularities
Source
Shortened version of Stadhouders et al's fetal liver data:
Stadhouders, R., Thongjuea, S., et al. (2012): Dynamic long-range chromatin
interactions control Myb proto-oncogene transcription during erythroid
development. EMBO, 31, 986-999.
Examples
1
2
data("liverDataVP")
liverDataVP
Scale4C documentation built on Nov. 8, 2020, 8:21 p.m.
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Description Usage Format Value Source Examples
Description
This data set contains an instance of a Scale4C object.
The 4C-seq data was taken from Stadhouders et al's fetal liver data set. It contains a manually added viewpoint peak and a peak with a manual coordinate correction.
Usage
1 | data("liverDataVP")
|
Format
Formal class 'Scale4C'
Value
A pre-computed instance of a Scale4C object with fingerprint
map and singularities
Source
Shortened version of Stadhouders et al's fetal liver data:
Stadhouders, R., Thongjuea, S., et al. (2012): Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development. EMBO, 31, 986-999.
Examples
1 2 | data("liverDataVP")
liverDataVP
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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