SpacePAC: Identification of Mutational Clusters in 3D Protein Space via Simulation.

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Identifies clustering of somatic mutations in proteins via a simulation approach while considering the protein's tertiary structure.

Author
Gregory Ryslik, Hongyu Zhao
Date of publication
None
Maintainer
Gregory Ryslik <gregory.ryslik@yale.edu>
License
GPL-2
Version
1.12.0

View on Bioconductor

Man pages

make.3D.Sphere
Plots a sphere centered at the specified amino acid with a...
SpaceClust
SpaceClust
SpacePAC-package
Identifying mutational clusters in 3D protein space using...

Files in this package

SpacePAC/DESCRIPTION
SpacePAC/NAMESPACE
SpacePAC/R
SpacePAC/R/SpaceClust.R
SpacePAC/R/calc.Protein.Metrics.R
SpacePAC/R/calc.Sphere.Metrics.R
SpacePAC/R/create.Distance.Matrix.R
SpacePAC/R/create.Result.Matrix.R
SpacePAC/R/cull.Mutation.Matrix.R
SpacePAC/R/find.2Ball.Max.R
SpacePAC/R/find.3Ball.Max.R
SpacePAC/R/get.Avg.Neighbor.Distance.R
SpacePAC/R/get.Local.Radius.Results.R
SpacePAC/R/get.Mutated.Positions.R
SpacePAC/R/get.distance.R
SpacePAC/R/make.3D.Sphere.R
SpacePAC/R/simulate.Protein.R
SpacePAC/build
SpacePAC/build/vignette.rds
SpacePAC/inst
SpacePAC/inst/NEWS.Rd
SpacePAC/inst/doc
SpacePAC/inst/doc/SpacePAC.R
SpacePAC/inst/doc/SpacePAC.Rnw
SpacePAC/inst/doc/SpacePAC.pdf
SpacePAC/inst/unitTests
SpacePAC/inst/unitTests/test_SpaceClust.R
SpacePAC/man
SpacePAC/man/SpaceClust.Rd
SpacePAC/man/SpacePAC-package.Rd
SpacePAC/man/make.3D.Sphere.Rd
SpacePAC/tests
SpacePAC/tests/runTests.R
SpacePAC/vignettes
SpacePAC/vignettes/2ENQ-A.png
SpacePAC/vignettes/Algorithm-Execution.pdf
SpacePAC/vignettes/Algorithm-Table.pdf
SpacePAC/vignettes/FinalStatisticDiagram.pdf
SpacePAC/vignettes/KRASRGL.png
SpacePAC/vignettes/SpacePAC.Rnw
SpacePAC/vignettes/refs.bib